mclink: Metabolic Pathway Completeness and Abundance Calculation
Provides tools for analyzing metabolic pathway completeness, abundance, and transcripts using KEGG Orthology (KO) data from (meta)genomic and (meta)transcriptomic studies. Supports both completeness (presence/absence) and abundance-weighted analyses. Includes built-in KEGG reference datasets. For more details see Li et al. (2023) <doi:10.1038/s41467-023-42193-7>.
| Version: | 1.1.1 |
| Depends: | R (≥ 3.5) |
| Imports: | data.table (≥ 1.17.0),dplyr (≥ 1.1.4),stringr (≥ 1.5.1),tibble (≥ 3.2.1), utils |
| Published: | 2025-10-26 |
| DOI: | 10.32614/CRAN.package.mclink |
| Author: | Liuyang Li [aut, cre] |
| Maintainer: | Liuyang Li <cyanobacteria at yeah.net> |
| BugReports: | https://github.com/LiuyangLee/mclink/issues |
| License: | GPL-3 |
| URL: | https://github.com/LiuyangLee/mclink |
| NeedsCompilation: | no |
| Materials: | README,ChangeLog |
| CRAN checks: | mclink results |
Documentation:
| Reference manual: | mclink.html ,mclink.pdf |
Downloads:
| Package source: | mclink_1.1.1.tar.gz |
| Windows binaries: | r-devel:mclink_1.1.1.zip, r-release:mclink_1.1.1.zip, r-oldrel:mclink_1.1.1.zip |
| macOS binaries: | r-release (arm64):mclink_1.1.1.tgz, r-oldrel (arm64):mclink_1.1.1.tgz, r-release (x86_64):mclink_1.1.1.tgz, r-oldrel (x86_64):mclink_1.1.1.tgz |
| Old sources: | mclink archive |
Linking:
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