amanida: Meta-Analysis for Non-Integral Data
Combination of results for meta-analysis using significance and effect size only. P-values and fold-change are combined to obtain a global significance on each metabolite. Produces a volcano plot summarising the relevant results from meta-analysis. Vote-counting reports for metabolites. And explore plot to detect discrepancies between studies at a first glance. Methodology is described in the Llambrich et al. (2021) <doi:10.1093/bioinformatics/btab591>.
| Version: | 0.3.0 |
| Depends: | R (≥ 4.1) |
| Imports: | dplyr (≥ 1.0.0),ggplot2 (≥ 3.3.0),ggrepel (≥ 0.9.0),kableExtra (≥ 1.3.0),knitr (≥ 1.45),magrittr (≥ 1.5), methods (≥ 3.6.0),readr (≥ 1.0.0),readxl (≥ 1.0.0),rmarkdown (≥ 2.25), stats (≥ 3.6.0),tibble (≥ 3.0.0),tidyr (≥ 1.1.0),tidyverse (≥ 1.3.0),webchem (≥ 1.1.0) |
| Suggests: | markdown,metaboliteIDmapping,testthat,vdiffr |
| Published: | 2024-01-26 |
| DOI: | 10.32614/CRAN.package.amanida |
| Author: | Maria Llambrich [aut, cre], Eudald Correig [aut], Raquel Cumeras [aut] |
| Maintainer: | Maria Llambrich <maria.llambrich at urv.cat> |
| License: | GPL-3 |
| URL: | https://github.com/mariallr/amanida |
| NeedsCompilation: | no |
| Materials: | README |
| In views: | MetaAnalysis |
| CRAN checks: | amanida results |
Documentation:
| Reference manual: | amanida.html ,amanida.pdf |
| Vignettes: | amanida_UserGuide (source,R code) |
Downloads:
| Package source: | amanida_0.3.0.tar.gz |
| Windows binaries: | r-devel:amanida_0.3.0.zip, r-release:amanida_0.3.0.zip, r-oldrel:amanida_0.3.0.zip |
| macOS binaries: | r-release (arm64):amanida_0.3.0.tgz, r-oldrel (arm64):amanida_0.3.0.tgz, r-release (x86_64):amanida_0.3.0.tgz, r-oldrel (x86_64):amanida_0.3.0.tgz |
| Old sources: | amanida archive |
Linking:
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