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finalsize: Calculate the Final Size of an Epidemic

Calculate the final size of a susceptible-infectious-recovered epidemic in a population with demographic variation in contact patterns and susceptibility to disease, as discussed in Miller (2012) <doi:10.1007/s11538-012-9749-6>.

Version:0.2.1
Depends:R (≥ 2.10)
Imports:checkmate,Rcpp
LinkingTo:Rcpp,RcppEigen
Suggests:bookdown,colorspace,dplyr,forcats,ggplot2,ggtext,knitr,purrr,rmarkdown,scales,socialmixr,spelling,testthat (≥3.0.0),tibble,tidyr,xml2
Published:2024-04-09
DOI:10.32614/CRAN.package.finalsize
Author:Pratik GupteORCID iD [aut, cre, cph], Edwin Van LeeuwenORCID iD [aut, cph], Adam KucharskiORCID iD [aut, cph], Rosalind EggoORCID iD [ctb], Hugo GrusonORCID iD [ctb], Thibaut JombartORCID iD [ctb], Andree Valle-CamposORCID iD [ctb], Joshua W. LambertORCID iD [rev]
Maintainer:Pratik Gupte <pratik.gupte at lshtm.ac.uk>
BugReports:https://github.com/epiverse-trace/finalsize/issues
License:MIT + fileLICENSE
URL:https://github.com/epiverse-trace/finalsize,https://epiverse-trace.github.io/finalsize/
NeedsCompilation:yes
Language:en-GB
Materials:README,NEWS
In views:Epidemiology
CRAN checks:finalsize results

Documentation:

Reference manual:finalsize.html ,finalsize.pdf
Vignettes:Comparison with a compartmental model (source,R code)
Projecting re-emergence risk after waning or new births (source,R code)
Calculating the final size of an epidemic (source,R code)
Guide to constructing susceptibility matrices (source,R code)
Theoretical background (source,R code)
Modelling uncertainty in R₀ (source,R code)
Modelling heterogeneous social contacts (source,R code)
Modelling heterogeneous susceptibility (source,R code)

Downloads:

Package source: finalsize_0.2.1.tar.gz
Windows binaries: r-devel:finalsize_0.2.1.zip, r-release:finalsize_0.2.1.zip, r-oldrel:finalsize_0.2.1.zip
macOS binaries: r-release (arm64):finalsize_0.2.1.tgz, r-oldrel (arm64):finalsize_0.2.1.tgz, r-release (x86_64):finalsize_0.2.1.tgz, r-oldrel (x86_64):finalsize_0.2.1.tgz
Old sources: finalsize archive

Linking:

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