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survival: Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Version:3.8-3
Priority:recommended
Depends:R (≥ 3.5.0)
Imports:graphics,Matrix, methods, splines, stats, utils
Published:2024-12-17
DOI:10.32614/CRAN.package.survival
Author:Terry M Therneau [aut, cre], Thomas Lumley [ctb, trl] (original S->R port and R maintainer until 2009), Atkinson Elizabeth [ctb], Crowson Cynthia [ctb]
Maintainer:Terry M Therneau <therneau.terry at mayo.edu>
License:LGPL-2 |LGPL-2.1 |LGPL-3 [expanded from: LGPL (≥ 2)]
Copyright:see fileCOPYRIGHTS
URL:https://github.com/therneau/survival
NeedsCompilation:yes
Citation:survival citation info
Materials:NEWS
In views:ClinicalTrials,Econometrics,Survival
CRAN checks:survival results

Documentation:

Reference manual:survival.html ,survival.pdf
Vignettes:Adjusted Survival Curves (source,R code)
Approximating a Cox Model (source,R code)
Multi-state models and competing risks (source,R code)
Concordance (source,R code)
Matrix exponentials (source,R code)
Survival package methods (source,R code)
Multi-state survival curves (source)
Other vignettes (source)
Population contrasts (source,R code)
Brier scores and the redistribute-to-the-right algorithm (source,R code)
Splines, plots, and interactions (source,R code)
The survival package (source,R code)
Roundoff error and tied times (source,R code)
Using Time Dependent Covariates (source,R code)
Validation (source,R code)

Downloads:

Package source: survival_3.8-3.tar.gz
Windows binaries: r-devel:survival_3.8-3.zip, r-release:survival_3.8-3.zip, r-oldrel:survival_3.8-3.zip
macOS binaries: r-release (arm64):survival_3.8-3.tgz, r-oldrel (arm64):survival_3.8-3.tgz, r-release (x86_64):survival_3.8-3.tgz, r-oldrel (x86_64):survival_3.8-3.tgz
Old sources: survival archive

Reverse dependencies:

Reverse depends:aCGH,AER,AF,ahaz,ahMLE,aisoph,anoint,APtools,BART,bayesDP,BayesianMediationA,BayesMixSurv,bayesSurv,BeQut,bhm,biostat3,blapsr,BMA,bmabart,bpcp,BRACE,bshazard,carcass,CaseCohortCoxSurvival,cchs,censored,CGEN,ClassifyR,cmprsk,coin,ComparisonSurv,compound.Cox,cond,contTimeCausal,Copula.Markov.survival,coxme,coxphm,coxphSGD,coxphw,CoxR2,CPE,crrcbcv,crrSC,csampling,ctqr,cuRe,curephEM,curesurv,currentSurvival,DCEtool,discfrail,distcomp,dnn,DOVE,DTAT,dtrSurv,dynpred,ebmstate,epiDisplay,epiR,EquiSurv,EstimationTools,eventTrack,EvidenceSynthesis,expertsurv,factorial2x2,FamEvent,FastJM,fitdistrplus,flexrsurv,flexsurv,flexsurvcure,FlexVarJM,frailtyEM,frailtyHL,frailtyMMpen,frailtypack,frailtySurv,frequentistSSD,gamlss.cens,gcerisk,geecure,glmpath,globaltest,gmvjoint,GofCens,goldilocks,GORCure,GSED,gte,haplo.ccs,HCmodelSets,hdbma,HybridMTest,iBST,icenReg,Icens,icensBKL,ICGOR,icpack,IDPSurvival,InferenceSMR,InformativeCensoring,interval,invGauss,IPCWK,IPDfromKM,ipflasso,isoSurv,iterativeBMAsurv,JM,JMbayes,JMbayes2,JMH,joineR,joineRML,joint.Cox,JSM,kin.cohort,KMunicate,linERR,lnmixsurv,logicFS,LogicReg,LongCART,lpl,MapGAM,marg,messina,mexhaz,mfp,miRecSurv,missDeaths,mixcure,mma,mmabig,mmc,ModTools,mRMRe,MST,mstate,multcomp,multipleNCC,multiridge,NADA,nftbart,nlreg,nltm,NPHMC,nricens,NSM3,oceCens,Oncofilterfast,OrdFacReg,ordinalgmifs,OTRselect,p3state.msm,packHV,parfm,partDSA,pch,penalized,PenCoxFrail,penPHcure,peperr,PHeval,PHInfiniteEstimates,PICBayes,plac,PRIMEplus,psbcGroup,psc,PwePred,PWEXP,PwrGSD,Qest,qrcm,qrcmNP,randomizeR,rbsurv,RcmdrPlugin.BWS1,RcmdrPlugin.BWS2,RcmdrPlugin.BWS3,RcmdrPlugin.DCE,RcmdrPlugin.survival,RegParallel,RelDists,relsurv,RISCA,risksetROC,RItools,RobustAFT,rprev,rstpm2,season,selectiveInference,SemiCompRisks,seqDesign,SigCheck,SIMMS,simMSM,SimNPH,smcure,smoothHR,smoothSurv,snpStats,sox,speff2trial,SPREDA,spsurv,ssym,STAND,stepp,surrosurvROC,survAH,survBootOutliers,survC1,survcomp,survcompare,SurvEval,survexp.fr,survextrap,survey,survIDINRI,survivalMPL,survivalPLANN,survivalSL,survivalsvm,survivalVignettes,survMisc,SurvRegCensCov,survRM2,survSNP,survstan,SurvTrunc,survtype,TH.data,threg,thregI,timereg,tLagInterim,tnet,TransModel,TwoArmSurvSim,uni.survival.tree,uniah,VAJointSurv,VEwaning,VEwaningVariant,xhaz,YPBP,YPPE,zCompositions
Reverse imports:abe,ABSurvTDC,ActFrag,addhazard,adjSURVCI,adjustedCurves,AdverseEvents,aftgee,afthd,aftR2,aftsem,afttest,AICcmodavg,allestimates,allMT,amt,ANF,ascii,autonomics,autoReg,AutoScore,autoslider.core,Ball,bamlss,base.rms,basecamb,BayesCTDesign,bayesCureRateModel,BayesFBHborrow,BayesSurvival,BayesSurvive,baytrends,BeSS,bestridge,BGPhazard,bigPLScox,bigSurvSGD,binequality,BioPETsurv,BioPred,biospear,BivRec,blockForest,BloodCancerMultiOmics2017,BNPdensity,bonsaiforest,boot.pval,bossR,bregr,BSGW,bujar,bunsen,burgle,c060,calibmsm,CalibrationCurves,canceR,cancerGI,caradpt,carSurv,carts,Cascade,casebase,CaseBasedReasoning,casper,catalytic,causalCmprsk,ccostr,CenBAR,cenROC,censCov,censcyt,CeRNASeek,CFC,CFO,cforward,cg,chest,chngpt,chopsticks,CIEE,CIMPLE,ciTools,clespr,clinpubr,clintools,clustcurv,cmprskcoxmsm,cmprskQR,coda4microbiome,CohortSurvival,cohorttools,comets,compareGroups,CondiS,condSURV,consICA,controlTest,CopulaCenR,CoRpower,cossonet,cotram,Counterfactual,CoxAIPW,CoxBcv,CoxBoost,CoxMK,Coxmos,coxphf,coxrobust,coxrt,CP,CPSM,CPsurv,crane,crmPack,CsChange,CSCNet,csmpv,CSTE,CureDepCens,cutoff,cutpoint,CutpointsOEHR,cyclomort,Cyclops,DCEmgmt,dcurves,debest,debiasedTrialEmulation,deeptrafo,DepCens,depCensoring,DeSousa2013,dipm,diversityForest,dpasurv,drcSeedGerm,drcte,drgee,dropR,drugDemand,dscoreMSM,DTEAssurance,dtlcor,DWreg,DynForest,DynNom,dynsurv,E2E,easy.glmnet,easysurv,EGRET,eha,EL2Surv,ELYP,em,EMGCR,ems,EnMCB,eoa3,epade,ePCR,Epi,EpidigiR,EpiForsk,epiomics,epistasisGA,epitab,EQUALSTATS,etm,etree,eventglm,eventPred,EventPredInCure,ExtendedABSurvTDC,extrafrail,ezcox,familiar,fastcmprsk,fastml,FHtest,fic,finalfit,findIPs,flassomsm,FLORAL,fmrs,forsearch,frailtyROC,fusedTree,gaawr2,GAGAs,gamlss,gbm,GDCRNATools,GEInter,genefilter,GenEst,gestate,GFDsurv,gfoRmula,ggparty,ggplot2.utils,ggquickeda,ggrisk,ggscidca,ggsurvfit,GJRM,glm.predict,glmmPen,glmnet,glmnetr,GNOSIS,gofreg,gomp,GPSCDF,GPTCM,GRAB,gravity,greport,GRIN2,gsDesign2,GSgalgoR,gsMAMS,GSSTDA,GTDL,GWASinlps,GWASTools,gwasurvivr,HazardDiff,HCTDesign,hdcuremodels,HDJM,hdnom,hds,hesim,highMLR,HIMA,horseshoenlm,HQM,hrcomprisk,ICcalib,ICcforest,icmstate,ICSKAT,IDMIR,imsig,incubate,interactionRCS,ipred,ipw,ipwCoxCSV,IrregLong,iterativeBMAsurv,ivtools,ivygapSE,JLPM,jmBIG,JointAI,jointCompRisk,JointFPM,jomo,jskm,jsmodule,jstable,km.ci,kmcut,kmi,KONPsurv,landest,Landmarking,landmulti,landpred,lava,lcmm,lilikoi,lillies,lodGWAS,LogicForest,longitudinalcascade,longROC,longsurr,LTRCtrees,maaslin3,mable,MachineShop,maczic,maftools,MAGNAMWAR,maicplus,MAICtools,MannWhitneyCopula,marcox,markovMSM,marlod,maxcombo,mboost,mccmeiv,MCPModBC,MDCcure,Mediana,meerva,MetabolicSurv,metaSurvival,mets,mfp2,MFSIS,mhazard,mhurdle,miceafter,miCoPTCM,MicrobiomeSurv,microsimulation,micsr,MiRKAT,miRspongeR,mixPHM,mixtools,mlma,mlr,mlt,mlt.docreg,mMARCH.AC,modeLLtest,modelSelection,modgo,mombf,MonotoneHazardRatio,moonBook,MOSClip,MPAC,mpr,mratios,MRMCbinary,msaenet,MSCCT,msm,MSstats,MTLR,muhaz,multiClust,multiModTest,multinma,multipleOutcomes,multisite.accuracy,multiview,multtest,My.stepwise,NADA2,NetSAM,NNMIS,nnt,nparsurv,nph,NPHazardRate,nphPower,nphRCT,nsROC,numKM,obliqueRSF,ODS,omicsViewer,OneArm2stage,OneArmTTE,OneSampleLogRankTest,OptimalTiming,oRaklE,orthoDr,oscar,otrKM,palasso,PAmeasures,pammtools,pamr,parTimeROC,party,partykit,pathwayPCA,pbatR,PBIR,PCLassoReg,pcvr,pda,PDATK,PDN,PDXpower,pec,penalizedclr,pencal,permimp,personalized,PERSUADE,pgxRpi,Phase123,phenoTest,phers,PJFM,plasma,pldamixture,plgraphics,plsmselect,plsRcox,PMAPscore,pmcalibration,polle,popEpi,postGGIR,powerSurvEpi,pre,precmed,predRupdate,presmoothedTP,priorityelasticnet,prioritylasso,prodlim,ProSGPV,psBayesborrow,psbcSpeedUp,psborrow,PScr,pseval,psfmi,psichomics,psm3mkv,PSsurvival,PTE,PTERP,pubh,Publish,PWEALL,qgcomp,qgcompint,Qindex,QoLMiss,qris,QTOCen,quantreg,R2Addhaz,R4HCR,r4pde,RABR,randomGLM,rankhazard,RcmdrPlugin.KMggplot2,rcssci,RealSurvSim,recforest,reconstructKM,recurrentpseudo,regmedint,regplot,regport,ReIns,remiod,remss,reportRmd,reReg,RESOLVE,ReSurv,riAFTBART,rifttable,rigr,riskRegression,RLassoCox,rms,rmsb,rmstcompsens,rnaEditr,RobinCar,RobinCar2,RoBSA,ROKET,ROlogit,rolr,rpsftm,rsides,rstanarm,Rsurrogate,RTCGA,RTNsurvival,safestats,SAME,SCCS,SCFA,SCORNET,scRNAtools,SEERaBomb,semicmprskcoxmsm,SemiPar.depCens,SensIAT,SEQTaRget,sGBJ,sglg,SHELF,shinyCox,shrink,shrinkDSM,SIDES,sievePH,SIGN,signeR,signifinder,sigsquared,sim.BA,SimHaz,simIDM,simPH,simtrial,SIS,skpr,SMAHP,smcfcs,smdi,SMDIC,SMPracticals,sMSROC,SNPassoc,sp23design,spatsurv,spBayesSurv,spect,spef,spicyR,squant,ssMutPA,SSRMST,starnet,stdReg,stdReg2,StepReg,stpm,stratamatch,StratifiedMedicine,SubgrpID,success,SUMMER,Sunclarco,superpc,SuRF.vs,Surrogate,SurrogateOutcome,SurrogateTest,surrosurv,surv2sampleComp,survAUC,survAWKMT2,survC,survClust,SurvCorr,survCurve,SurvDisc,survdnn,survELtest,survex,surveynnet,SurvGME,SurvHiDim,survidm,SurvImpute,survival.svb,SurvivalClusteringTree,survivalMPLdc,survivalREC,survlab,SurvMA,SurvMetrics,SurvMI,survminer,survML,survobj,survout,survParamSim,survRM2adapt,survRM2perm,survSAKK,survSens,SVMDO,svycoxme,SvyNom,synthpop,tableeasy,targeted,tauProcess,tdROC,TENET,tern,tfCox,ThomasJeffersonUniv,ThresholdROCsurvival,tidyCDISC,tidycmprsk,TidyDensity,TimeVTree,tinyarray,tLagPropOdds,TOP,tornado,trajmsm,tram,tramicp,TraMineRextras,transmdl,tranSurv,TreatmentSelection,TrialSimulator,trio,truncAIPW,TSDT,tsriadditive,tteICE,TwoStepCLogit,vaccine,vaccineff,valorate,varPro,VarReg,vaxpmx,VBJM,vpc,VSOLassoBag,WCE,Wcompo,wcox,WGCNA,WINS,wintime,WLreg,WR,WRTDStidal,xpose4,YPmodelPhreg
Reverse suggests:agridat,alcoholSurv,aorsf,aplore3,arsenal,ARTool,asympDiag,atable,BayesGP,bayesplot,BB,BCClong,beastt,BFpack,BGLR,biglasso,blendR,bnnSurvival,boot,Boruta,brea,BrokenAdaptiveRidge,broom,broom.helpers,BulkSignalR,butcher,BuyseTest,CADF,CALIBERrfimpute,car,cardx,cBioPortalData,cequre,choplump,cifmodeling,clinfun,cloneRate,collett,Colossus,compareCstat,confSAM,contsurvplot,copcor,coreSim,crosstable,CTNote,curatedBladderData,curatedOvarianData,curatedPCaData,DAAG,DanielBiostatistics10th,dawai,descsuppR,desctable,discSurv,dlnm,doBy,dressCheck,DTEBOP2,dtrackr,edecob,EmpiricalCalibration,EpiMix,exactRankTests,extremefit,fairml,fastAFT,FastKM,flexmix,fluoSurv,forestmodel,forplo,FRESA.CAD,fwb,gamair,gamboostLSS,gamlss.inf,gap,genefu,genSurv,GGally,ggeffects,ggformula,ggfortify,ggpolar,ggstats,ggstatsplot,glmSparseNet,glmulti,Greg,grf,grImport,groupedHyperframe,grpreg,gtsummary,guideR,h2o,hal9001,HarmonizedTCGAData,hdbayes,heemod,highcharter,Hmisc,homomorpheR,HSAUR,HSAUR2,HSAUR3,hyper.gam,iClusterVB,important,injurytools,INLAjoint,insight,iNZightRegression,irboost,ISwR,kdry,kernhaz,kmc,kyotil,lavaSearch2,LDM,lgspline,lmtest,lrstat,lss2,marginaleffects,marginalizedRisk,MASS,MatchIt,maxEff,maxstat,mc2d,mccount,MCPModGeneral,mediation,metafor,mgcv,mi,mice,midasHLA,mitml,mlr3filters,mlsurvlrnrs,modelbased,modelsummary,momentuHMM,MultiAssayExperiment,MuMIn,musicatk,mxfda,ncvreg,netdiffuseR,nipalsMCIA,nlive,nncc,npsm,optband,outreg,pander,parameters,parmsurvfit,parsnip,PatientLevelPrediction,pder,pensim,performance,ph2bye,ph2mult,phyloregion,pillar,PINSPlus,PlackettLuce,plotmm,pmartR,pmml,pmxpartab,PResiduals,psborrow2,purge,qwraps2,R2HTML,randomForestSRC,ranger,rattle,recodeflow,RegrCoeffsExplorer,relevance,report,reporttools,reservr,RESI,ricu,rineq,RLT,rmdl,rpart,rsimsum,rsmatch,rsurv,rtables,rtables.officer,RVAideMemoire,saemix,safe,sandwich,SHAPBoost,sharp,shinyPredict,ShrinkageTrees,simDAG,simex,simstudy,simsurv,sirus,smof,smoothROCtime,sparseR,splineplot,srvyr,Statial,statlingua,statsExpressions,StepRegShiny,subscreen,summarySCI,support.BWS,support.BWS2,support.BWS3,support.CEs,survivalmodels,SurvivalTests,survregVB,tab,tableone,tbm,TCGAbiolinks,texmex,tfrmt,tidybulk,timeEL,timeROC,tramME,tramnet,tramvs,treeshap,trtf,trtswitch,truncreg,tune,tuneRanger,UCSCXenaShiny,Umpire,utile.tables,utile.tools,utile.visuals,VirtualPop,visreg,wally,WARDEN,WeightIt,WinRatio,xgboost,xtable,yardstick,zlog,ztable
Reverse enhances:denstrip,emmeans,papeR,prediction,qvcalc,stargazer,texreg

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