Fits community site occupancy models to environmental DNA metabarcoding data collected using spatially-replicated survey design. Model fitting results can be used to evaluate and compare the effectiveness of species detection to find an efficient survey design. Reference: Fukaya et al. (2022) <doi:10.1111/2041-210X.13732>, Fukaya and Hasebe (2025) <doi:10.1002/1438-390X.12219>.
| Version: | 1.2.1 |
| Depends: | jagsUI, R (≥ 2.10) |
| Imports: | stats, methods, graphics,checkmate,crayon,knitr |
| Suggests: | covr,rmarkdown,spelling,testthat (≥ 3.0.0),tibble,vdiffr |
| Published: | 2025-07-16 |
| DOI: | 10.32614/CRAN.package.occumb |
| Author: | Keiichi Fukaya [aut, cre], Ken Kellner [cph] (summary method for occumbFit class), Mika Takahashi [aut] |
| Maintainer: | Keiichi Fukaya <fukayak99 at gmail.com> |
| BugReports: | https://github.com/fukayak/occumb/issues |
| License: | GPL (≥ 3) |
| URL: | https://fukayak.github.io/occumb/,https://github.com/fukayak/occumb |
| NeedsCompilation: | no |
| SystemRequirements: | JAGS (http://mcmc-jags.sourceforge.net) |
| Language: | en-US |
| Materials: | README,NEWS |
| CRAN checks: | occumb results |
| Reference manual: | occumb.html ,occumb.pdf |
| Vignettes: | Model specification in occumb() (source,R code) Introduction to occumb (source,R code) |
| Package source: | occumb_1.2.1.tar.gz |
| Windows binaries: | r-devel:occumb_1.2.1.zip, r-release:occumb_1.2.1.zip, r-oldrel:occumb_1.2.1.zip |
| macOS binaries: | r-release (arm64):occumb_1.2.1.tgz, r-oldrel (arm64):occumb_1.2.1.tgz, r-release (x86_64):occumb_1.2.1.tgz, r-oldrel (x86_64):occumb_1.2.1.tgz |
| Old sources: | occumb archive |
Please use the canonical formhttps://CRAN.R-project.org/package=occumbto link to this page.