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bama: High Dimensional Bayesian Mediation Analysis

Perform mediation analysis in the presence of high-dimensional mediators based on the potential outcome framework. Bayesian Mediation Analysis (BAMA), developed by Song et al (2019) <doi:10.1111/biom.13189> and Song et al (2020) <doi:10.48550/arXiv.2009.11409>, relies on two Bayesian sparse linear mixed models to simultaneously analyze a relatively large number of mediators for a continuous exposure and outcome assuming a small number of mediators are truly active. This sparsity assumption also allows the extension of univariate mediator analysis by casting the identification of active mediators as a variable selection problem and applying Bayesian methods with continuous shrinkage priors on the effects.

Version:1.3.1
Depends:R (≥ 3.5)
Imports:Rcpp, parallel
LinkingTo:Rcpp,RcppArmadillo,RcppDist,BH
Suggests:knitr,rmarkdown
Published:2025-09-20
DOI:10.32614/CRAN.package.bama
Author:Alexander Rix [aut], Mike Kleinsasser [aut, cre], Yanyi Song [aut]
Maintainer:Mike Kleinsasser <mkleinsa at umich.edu>
BugReports:https://github.com/umich-cphds/bama/issues
License:GPL-3
URL:https://github.com/umich-cphds/bama
NeedsCompilation:yes
Materials:README
In views:Bayesian
CRAN checks:bama results

Documentation:

Reference manual:bama.html ,bama.pdf
Vignettes:Bayesian Mediation Analysis in R (source,R code)

Downloads:

Package source: bama_1.3.1.tar.gz
Windows binaries: r-devel:bama_1.3.1.zip, r-release:bama_1.3.1.zip, r-oldrel:bama_1.3.1.zip
macOS binaries: r-release (arm64):bama_1.3.1.tgz, r-oldrel (arm64):bama_1.3.1.tgz, r-release (x86_64):bama_1.3.1.tgz, r-oldrel (x86_64):bama_1.3.1.tgz
Old sources: bama archive

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=bamato link to this page.


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