APackOfTheClones: Visualization of Clonal Expansion for Single Cell ImmuneProfiles
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>.
| Version: | 1.3.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | assertthat,dplyr,ggforce,ggplot2,hash,lifecycle,magrittr, methods,Rcpp,rlang,Seurat,SeuratObject |
| LinkingTo: | Rcpp |
| Suggests: | cowplot,covr,knitr,rmarkdown,spelling,testthat (≥3.0.0),vdiffr,colorspace |
| Published: | 2025-08-18 |
| DOI: | 10.32614/CRAN.package.APackOfTheClones |
| Author: | Qile Yang [cre, aut, cph] |
| Maintainer: | Qile Yang <qile.yang at berkeley.edu> |
| BugReports: | https://github.com/Qile0317/APackOfTheClones/issues |
| License: | MIT + fileLICENSE |
| URL: | https://qile0317.github.io/APackOfTheClones/,https://github.com/Qile0317/APackOfTheClones,https://joss.theoj.org/papers/10.21105/joss.06868 |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | APackOfTheClones citation info |
| CRAN checks: | APackOfTheClones results |
Documentation:
Downloads:
| Package source: | APackOfTheClones_1.3.0.tar.gz |
| Windows binaries: | r-devel:APackOfTheClones_1.3.0.zip, r-release:APackOfTheClones_1.3.0.zip, r-oldrel:APackOfTheClones_1.3.0.zip |
| macOS binaries: | r-release (arm64):APackOfTheClones_1.3.0.tgz, r-oldrel (arm64):APackOfTheClones_1.3.0.tgz, r-release (x86_64):APackOfTheClones_1.3.0.tgz, r-oldrel (x86_64):APackOfTheClones_1.3.0.tgz |
| Old sources: | APackOfTheClones archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=APackOfTheClonesto link to this page.