dyngen: A Multi-Modal Simulator for Spearheading Single-Cell OmicsAnalyses
A novel, multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. 'dyngen' is more flexible than current single-cell simulation engines. It allows better method development and benchmarking, thereby stimulating development and testing of novel computational methods. Cannoodt et al. (2021) <doi:10.1038/s41467-021-24152-2>.
| Version: | 1.0.5 |
| Depends: | R (≥ 3.5.0) |
| Imports: | assertthat,dplyr,dynutils (≥ 1.0.10),ggplot2,ggraph (≥2.0),ggrepel,GillespieSSA2 (≥ 0.2.6), grDevices, grid,igraph,lmds,Matrix, methods,patchwork,pbapply,purrr,rlang (≥ 0.4.1), stats,tibble,tidygraph,tidyr, utils,viridis |
| Suggests: | anndata,covr,dynwrap (≥ 1.2.0),R.rsp,rmarkdown,Seurat,SingleCellExperiment (≥ 1.5.3),SummarizedExperiment,testthat |
| Published: | 2022-10-12 |
| DOI: | 10.32614/CRAN.package.dyngen |
| Author: | Robrecht Cannoodt [aut, cre, cph], Wouter Saelens [aut] |
| Maintainer: | Robrecht Cannoodt <rcannood at gmail.com> |
| BugReports: | https://github.com/dynverse/dyngen/issues |
| License: | MIT + fileLICENSE |
| URL: | https://dyngen.dynverse.org,https://github.com/dynverse/dyngen |
| NeedsCompilation: | no |
| Citation: | dyngen citation info |
| Materials: | README,NEWS |
| CRAN checks: | dyngen results |
Documentation:
| Reference manual: | dyngen.html ,dyngen.pdf |
| Vignettes: | Getting started (source) Installation instructions (source) |
Downloads:
| Package source: | dyngen_1.0.5.tar.gz |
| Windows binaries: | r-devel:dyngen_1.0.5.zip, r-release:dyngen_1.0.5.zip, r-oldrel:dyngen_1.0.5.zip |
| macOS binaries: | r-release (arm64):dyngen_1.0.5.tgz, r-oldrel (arm64):dyngen_1.0.5.tgz, r-release (x86_64):dyngen_1.0.5.tgz, r-oldrel (x86_64):dyngen_1.0.5.tgz |
| Old sources: | dyngen archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=dyngento link to this page.