beautier: 'BEAUti' from R
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.
| Version: | 2.6.12 |
| Imports: | ape,rappdirs,purrr,rlang (≥ 1.1.0),seqinr,stringr |
| Suggests: | knitr,markdown,readr,rmarkdown,testthat (≥ 2.1.0) |
| Published: | 2024-04-01 |
| DOI: | 10.32614/CRAN.package.beautier |
| Author: | Richèl J.C. Bilderbeek [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), Paul Van Els [ctb], Raphael Scherrer [ctb], Yacine B. Chehida [ctb], Katharine S. Walter [ctb], Gary Napier [ctb], Jason Griffiths [ctb], Thijs Janzen [ctb], Pedro Taucce [ctb], Olivier Roy [ctb], Jana Riederer [ctb] |
| Maintainer: | Richèl J.C. Bilderbeek <rjcbilderbeek at gmail.com> |
| BugReports: | https://github.com/ropensci/beautier/issues |
| License: | GPL-3 |
| URL: | https://docs.ropensci.org/beautier/,https://github.com/ropensci/beautier |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | beautier citation info |
| In views: | Phylogenetics |
| CRAN checks: | beautier results |
Documentation:
| Reference manual: | beautier.html ,beautier.pdf |
| Vignettes: | beautier demo (source,R code) Examples (source,R code) Inference Models (source,R code) |
Downloads:
| Package source: | beautier_2.6.12.tar.gz |
| Windows binaries: | r-devel:beautier_2.6.12.zip, r-release:beautier_2.6.12.zip, r-oldrel:beautier_2.6.12.zip |
| macOS binaries: | r-release (arm64):beautier_2.6.12.tgz, r-oldrel (arm64):beautier_2.6.12.tgz, r-release (x86_64):beautier_2.6.12.tgz, r-oldrel (x86_64):beautier_2.6.12.tgz |
| Old sources: | beautier archive |
Reverse dependencies:
| Reverse depends: | babette |
| Reverse imports: | beastier,mcbette,nodeSub |
| Reverse suggests: | mauricer |
Linking:
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