Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.
| Version: | 0.2.0 |
| Depends: | stats, methods, grDevices, R (≥ 3.6) |
| Imports: | cli,ggplot2,Matrix,plot3D,plotly,RColorBrewer,Rcpp,rlang,viridis |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | hdf5r,knitr,magick,patchwork,rmarkdown,Seurat,SeuratObject,SingleCellExperiment,SummarizedExperiment,testthat (≥ 3.0.0) |
| Published: | 2025-04-23 |
| DOI: | 10.32614/CRAN.package.CytoSimplex |
| Author: | Yichen Wang [aut, cre], Jialin Liu [aut], Joshua Welch [cph] |
| Maintainer: | Yichen Wang <wayichen at umich.edu> |
| License: | GPL-3 |
| URL: | https://welch-lab.github.io/CytoSimplex/,https://github.com/welch-lab/CytoSimplex |
| NeedsCompilation: | yes |
| Materials: | README,NEWS |
| CRAN checks: | CytoSimplex results |