A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | ggplot2, utils,Seurat,shiny,shinydashboard,DT,shinycssloaders,patchwork, tools,colourpicker,shinyWidgets,scales,SeuratObject,shinyjqui,shinyBS,ggalluvial,dplyr,ComplexHeatmap,qs2,circlize,reshape2, stats,htmltools |
| Suggests: | BiocManager,DESeq2,MAST,roxygen2,devtools |
| Published: | 2025-03-13 |
| DOI: | 10.32614/CRAN.package.SeuratExplorer |
| Author: | Yongchao Zhang [aut, cre] (https://github.com/fentouxungui) |
| Maintainer: | Yongchao Zhang <zhangyongchao at nibs.ac.cn> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | SeuratExplorer results |