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CohortGenerator: Cohort Generation for the OMOP Common Data Model

Generate cohorts and subsets using an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database. Cohorts are defined using 'CIRCE' (<https://github.com/ohdsi/circe-be>) or SQL compatible with 'SqlRender' (<https://github.com/OHDSI/SqlRender>).

Version:1.0.1
Depends:DatabaseConnector (≥ 5.0.0), R (≥ 4.1.0),R6
Imports:checkmate,digest,dplyr,lubridate, methods,ParallelLogger (≥ 3.0.0),readr (≥ 2.1.0),rlang,jsonlite,ResultModelManager (≥ 0.6.0),SqlRender (≥ 1.11.1),stringi (≥ 1.7.6),tibble
Suggests:CirceR (≥ 1.1.1),duckdb,Eunomia,ggplot2,knitr,rmarkdown,testthat,withr,zip
Published:2025-11-17
DOI:10.32614/CRAN.package.CohortGenerator
Author:Anthony Sena [aut, cre], Jamie Gilbert [aut], Gowtham Rao [aut], Freddy Avila Cruz [aut], Martijn Schuemie [aut], Observational Health Data Science and Informatics [cph]
Maintainer:Anthony Sena <sena at ohdsi.org>
BugReports:https://github.com/OHDSI/CohortGenerator/issues
License:Apache License version 1.1 |Apache License version 2.0 [expanded from: Apache License]
URL:https://ohdsi.github.io/CohortGenerator/,https://github.com/OHDSI/CohortGenerator
NeedsCompilation:no
Language:en-US
Materials:README,NEWS
CRAN checks:CohortGenerator results

Documentation:

Reference manual:CohortGenerator.html ,CohortGenerator.pdf
Vignettes:Creating Cohort Subset Definitions (source,R code)
Generating Cohorts (source,R code)
Sampling Cohorts (source,R code)
Using Template Cohorts (source,R code)

Downloads:

Package source: CohortGenerator_1.0.1.tar.gz
Windows binaries: r-devel:CohortGenerator_1.0.1.zip, r-release:CohortGenerator_1.0.1.zip, r-oldrel:CohortGenerator_1.0.1.zip
macOS binaries: r-release (arm64):CohortGenerator_1.0.1.tgz, r-oldrel (arm64):CohortGenerator_1.0.1.tgz, r-release (x86_64):CohortGenerator_1.0.1.tgz, r-oldrel (x86_64):CohortGenerator_1.0.1.tgz
Old sources: CohortGenerator archive

Reverse dependencies:

Reverse suggests:TreatmentPatterns

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=CohortGeneratorto link to this page.


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