AnanseSeurat: Construct ANANSE GRN-Analysis Seurat
Enables gene regulatory network (GRN) analysis on single cell clusters, using the GRN analysis software 'ANANSE', Xu et al.(2021) <doi:10.1093/nar/gkab598>. Export data from 'Seurat' objects, for GRN analysis by 'ANANSE' implemented in 'snakemake'. Finally, incorporate results for visualization and interpretation.
| Version: | 1.2.0 |
| Depends: | R (≥ 3.50) |
| Imports: | dplyr,ggplot2,ggpubr,magrittr,patchwork,png,purrr,rlang,Seurat,stringr, utils |
| Suggests: | covr,knitr,rmarkdown,Signac,testthat (≥ 3.0.0) |
| Published: | 2023-11-11 |
| DOI: | 10.32614/CRAN.package.AnanseSeurat |
| Author: | Jos Smits [aut, cre, cph], Huiqing Jo Zhou [aut, fnd, cph] |
| Maintainer: | Jos Smits <Jsmits at science.ru.nl> |
| BugReports: | https://github.com/JGASmits/AnanseSeurat/issues |
| License: | Apache License (≥ 2) |
| URL: | https://github.com/JGASmits/AnanseSeurat/ |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | AnanseSeurat results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=AnanseSeuratto link to this page.