LDlinkR: Calculating Linkage Disequilibrium (LD) in Human PopulationGroups of Interest
Provides access to the 'LDlink' API (<https://ldlink.nih.gov/?tab=apiaccess>) using the R console. This programmatic access facilitates researchers who are interested in performing batch queries in 1000 Genomes Project (2015) <doi:10.1038/nature15393> data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying germline variants in human population groups of interest. For more details, please see Machiela et al. (2015) <doi:10.1093/bioinformatics/btv402>.
| Version: | 1.4.0 |
| Imports: | httr (≥ 1.4.0), utils (≥ 3.4.2) |
| Suggests: | testthat,knitr,rmarkdown,spelling |
| Published: | 2024-04-10 |
| DOI: | 10.32614/CRAN.package.LDlinkR |
| Author: | Timothy A. Myers [aut, cre], Stephen J. Chanock [aut], Mitchell J. Machiela [aut] |
| Maintainer: | Timothy A. Myers <myersta at mail.nih.gov> |
| BugReports: | https://github.com/CBIIT/LDlinkR/issues |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://ldlink.nih.gov |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | LDlinkR citation info |
| Materials: | README,NEWS |
| CRAN checks: | LDlinkR results |
Documentation:
| Reference manual: | LDlinkR.html ,LDlinkR.pdf |
| Vignettes: | *LDlinkR*: An R Package for Rapidly Calculating Linkage Disequilibrium Statistics in Diverse Populations (source,R code) |
Downloads:
| Package source: | LDlinkR_1.4.0.tar.gz |
| Windows binaries: | r-devel:LDlinkR_1.4.0.zip, r-release:LDlinkR_1.4.0.zip, r-oldrel:LDlinkR_1.4.0.zip |
| macOS binaries: | r-release (arm64):LDlinkR_1.4.0.tgz, r-oldrel (arm64):LDlinkR_1.4.0.tgz, r-release (x86_64):LDlinkR_1.4.0.tgz, r-oldrel (x86_64):LDlinkR_1.4.0.tgz |
| Old sources: | LDlinkR archive |
Reverse dependencies:
| Reverse imports: | locuszoomr |
| Reverse suggests: | GRaNIE |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=LDlinkRto link to this page.