LBDiscover: Literature-Based Discovery Tools for Biomedical Research
A suite of tools for literature-based discovery in biomedical research. Provides functions for retrieving scientific articles from 'PubMed' and other NCBI databases, extracting biomedical entities (diseases, drugs, genes, etc.), building co-occurrence networks, and applying various discovery models including 'ABC', 'AnC', 'LSI', and 'BITOLA'. The package also includes visualization tools for exploring discovered connections.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | httr (≥ 1.4.0),xml2 (≥ 1.3.0),igraph (≥ 1.2.0),Matrix (≥ 1.3.0), utils, stats, grDevices, graphics, tools,rentrez (≥ 1.2.0),jsonlite (≥ 1.7.0) |
| Suggests: | openxlsx (≥ 4.2.0),SnowballC (≥ 0.7.0),visNetwork (≥2.1.0),spacyr (≥ 1.2.0), parallel,digest (≥ 0.6.0),irlba (≥ 2.3.0),knitr,rmarkdown,base64enc,reticulate,testthat (≥ 3.0.0),mockery,covr,htmltools,data.table,tibble |
| Published: | 2025-06-16 |
| DOI: | 10.32614/CRAN.package.LBDiscover |
| Author: | Chao Liu [aut, cre] |
| Maintainer: | Chao Liu <chaoliu at cedarville.edu> |
| BugReports: | https://github.com/chaoliu-cl/LBDiscover/issues |
| License: | GPL-3 |
| URL: | https://github.com/chaoliu-cl/LBDiscover,https://liu-chao.site/LBDiscover/ |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | LBDiscover results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=LBDiscoverto link to this page.