Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.
| Version: | 0.10 |
| Depends: | R (≥ 3.2) |
| Imports: | bamsignals (≥ 1.10.0),Biostrings (≥ 2.46.0),data.table (≥1.11.4),GenomicRanges (≥ 1.30.3),GenomicTools.fileHandler (≥ 0.1.4),httr (≥ 1.3.1),IRanges (≥ 2.12.0),KernSmooth (≥ 2.23-15),knitr (≥ 1.20),MASS (≥ 7.3-31),R.utils (≥2.6.0),RCurl (≥ 1.95),rmarkdown (≥ 1.10),Rsamtools (≥1.30.0),S4Vectors (≥ 0.16.0),seqinr (≥ 1.0-2),stringr (≥1.3.1),XML (≥ 3.98-1.1) |
| Published: | 2024-04-08 |
| DOI: | 10.32614/CRAN.package.hoardeR |
| Author: | Daniel Fischer [aut, cre], Anu Sironen [aut] |
| Maintainer: | Daniel Fischer <daniel.fischer at luke.fi> |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Materials: | README,ChangeLog |
| CRAN checks: | hoardeR results |
| Reference manual: | hoardeR.html ,hoardeR.pdf |
| Vignettes: | An Introduction to hoardeR (source,R code) |
| Package source: | hoardeR_0.10.tar.gz |
| Windows binaries: | r-devel:hoardeR_0.10.zip, r-release:hoardeR_0.10.zip, r-oldrel:hoardeR_0.10.zip |
| macOS binaries: | r-release (arm64):hoardeR_0.10.tgz, r-oldrel (arm64):hoardeR_0.10.tgz, r-release (x86_64):hoardeR_0.10.tgz, r-oldrel (x86_64):hoardeR_0.10.tgz |
| Old sources: | hoardeR archive |
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