Genotyping assays for bi-allelic markers (e.g. SNPs) producesignal intensities for the two alleles. 'fitPoly' assigns genotypes (allele dosages) to a collection of polyploid samples based on thesesignal intensities. 'fitPoly' replaces the older package 'fitTetra' that waslimited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts anyploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011)<doi:10.1186/1471-2105-12-172>. New functions added on conversion of data from SNP array software formats, drawing of XY-scatterplots with or without genotype colors, checking against expected F1 segregation patterns, comparing results from two different assays (probes) for the same SNP, recovery from a saveMarkerModels() crash.
| Version: | 4.0.0 |
| Depends: | R (≥ 3.2.0) |
| Imports: | foreach,devEMF,doParallel, grDevices |
| Suggests: | knitr,rmarkdown |
| Published: | 2025-02-13 |
| DOI: | 10.32614/CRAN.package.fitPoly |
| Author: | Roeland E. Voorrips [aut], Gerrit Gort [aut], Alejandro Therese Navarro [aut], Giorgio Tumino [aut, cre] |
| Maintainer: | Giorgio Tumino <giorgio.tumino at wur.nl> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | fitPoly results |
| Reference manual: | fitPoly.html ,fitPoly.pdf |
| Vignettes: | Data import and preparation (source,R code) Analysis of F1 scores (source,R code) |
| Package source: | fitPoly_4.0.0.tar.gz |
| Windows binaries: | r-devel:fitPoly_4.0.0.zip, r-release:fitPoly_4.0.0.zip, r-oldrel:fitPoly_4.0.0.zip |
| macOS binaries: | r-release (arm64):fitPoly_4.0.0.tgz, r-oldrel (arm64):fitPoly_4.0.0.tgz, r-release (x86_64):fitPoly_4.0.0.tgz, r-oldrel (x86_64):fitPoly_4.0.0.tgz |
| Old sources: | fitPoly archive |
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