bdc: Biodiversity Data Cleaning
It brings together several aspects of biodiversity data-cleaning in one place. 'bdc' is organized in thematic modules related to different biodiversity dimensions, including 1) Merge datasets: standardization and integration of different datasets; 2) Pre-filter: flagging and removal of invalid or non-interpretable information, followed by data amendments; 3) Taxonomy: cleaning, parsing, and harmonization of scientific names from several taxonomic groups against taxonomic databases locally stored through the application of exact and partial matching algorithms; 4) Space: flagging of erroneous, suspect, and low-precision geographic coordinates; and 5) Time: flagging and, whenever possible, correction of inconsistent collection date. In addition, it contains features to visualize, document, and report data quality – which is essential for making data quality assessment transparent and reproducible. The reference for the methodology is Bruno et al. (2022) <doi:10.1111/2041-210X.13868>.
| Version: | 1.1.5 |
| Imports: | CoordinateCleaner,doParallel,dplyr,DT,foreach,fs,ggplot2,here,magrittr,purrr,qs,readr,rgnparser,rnaturalearth,sf (≥ 1.0.5),stringdist,stringi,stringr,taxadb (≥ 0.1.3),tibble,tidyselect |
| Suggests: | contentid (≥ 0.0.15),covr,cowplot,DBI,duckdb (≥ 0.3.2),knitr (≥ 1.31),maps,markdown,rappdirs,raster,remotes,rlang (≥ 1.0.1),rmarkdown,rnaturalearthdata,sp,rvest,xml2,testthat (≥ 3.0.0) |
| Published: | 2024-12-17 |
| DOI: | 10.32614/CRAN.package.bdc |
| Author: | Bruno Ribeiro [aut, cre], Santiago Velazco [aut], Karlo Guidoni-Martins [aut], Geiziane Tessarolo [aut], Lucas Jardim [aut], Steven Bachman [ctb], Rafael Loyola [ctb] |
| Maintainer: | Bruno Ribeiro <ribeiro.brr at gmail.com> |
| BugReports: | https://github.com/brunobrr/bdc/issues |
| License: | GPL (≥ 3) |
| URL: | https://brunobrr.github.io/bdc/ (website)https://github.com/brunobrr/bdc |
| NeedsCompilation: | no |
| Language: | en-gb |
| Materials: | README,NEWS |
| CRAN checks: | bdc results |
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