netgsa: Network-Based Gene Set Analysis
Carry out network-based gene set analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. Implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.
| Version: | 4.0.6 |
| Depends: | R (≥ 3.5.0) |
| Imports: | AnnotationDbi,corpcor,data.table,dplyr,genefilter,graph,graphite,glmnet,glassoFast,httr,igraph,magrittr,Matrix,msigdbr,org.Hs.eg.db,quadprog,RCy3,reshape2,rlang,Rcpp (≥ 1.0.2) |
| LinkingTo: | Rcpp,RcppEigen |
| Suggests: | knitr,MASS,rmarkdown |
| Published: | 2025-07-30 |
| DOI: | 10.32614/CRAN.package.netgsa |
| Author: | Michael Hellstern [aut, cre], Ali Shojaie [aut], Jing Ma [aut], Kun Yue [aut] |
| Maintainer: | Michael Hellstern <mikeh1 at uw.edu> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/mikehellstern/netgsa |
| NeedsCompilation: | yes |
| Materials: | README,NEWS |
| In views: | Omics |
| CRAN checks: | netgsa results |
Documentation:
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