mbmixture: Microbiome Mixture Analysis
Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2021) <doi:10.1093/g3journal/jkab308>.
| Version: | 0.6 |
| Depends: | R (≥ 3.1.0) |
| Imports: | stats, parallel,numDeriv |
| Suggests: | knitr,rmarkdown,testthat,devtools,roxygen2 |
| Published: | 2024-11-27 |
| DOI: | 10.32614/CRAN.package.mbmixture |
| Author: | Karl W Broman [aut, cre] |
| Maintainer: | Karl W Broman <broman at wisc.edu> |
| BugReports: | https://github.com/kbroman/mbmixture/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/kbroman/mbmixture |
| NeedsCompilation: | no |
| Citation: | mbmixture citation info |
| Materials: | README,NEWS |
| CRAN checks: | mbmixture results |
Documentation:
| Reference manual: | mbmixture.html ,mbmixture.pdf |
| Vignettes: | R/mbmixture User Guide (source,R code) |
Downloads:
| Package source: | mbmixture_0.6.tar.gz |
| Windows binaries: | r-devel:mbmixture_0.6.zip, r-release:mbmixture_0.6.zip, r-oldrel:mbmixture_0.6.zip |
| macOS binaries: | r-release (arm64):mbmixture_0.6.tgz, r-oldrel (arm64):mbmixture_0.6.tgz, r-release (x86_64):mbmixture_0.6.tgz, r-oldrel (x86_64):mbmixture_0.6.tgz |
| Old sources: | mbmixture archive |
Linking:
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