A toolkit for analysis of genomic data. The 'misha' package implements an efficient data structure for storing genomic data, and provides a set of functions for data extraction, manipulation and analysis. Some of the 2D genome algorithms were described in Yaffe and Tanay (2011) <doi:10.1038/ng.947>.
| Version: | 5.3.2 |
| Depends: | R (≥ 3.0.0) |
| Imports: | magrittr,curl,digest,ps, parallel, utils |
| Suggests: | data.table,dplyr,glue,knitr,readr,rmarkdown,spelling, stats,stringr,testthat (≥ 3.0.0),tibble,withr |
| OS_type: | unix |
| Published: | 2025-12-14 |
| DOI: | 10.32614/CRAN.package.misha |
| Author: | Misha Hoichman [aut], Aviezer Lifshitz [aut, cre], Eitan Yaffe [aut], Amos Tanay [aut], Weizmann Institute of Science [cph] |
| Maintainer: | Aviezer Lifshitz <aviezer.lifshitz at weizmann.ac.il> |
| BugReports: | https://github.com/tanaylab/misha/issues |
| License: | MIT + fileLICENSE |
| URL: | https://tanaylab.github.io/misha/,https://github.com/tanaylab/misha |
| NeedsCompilation: | yes |
| Language: | en-US |
| Materials: | README,NEWS |
| CRAN checks: | misha results |
| Reference manual: | misha.html ,misha.pdf |
| Vignettes: | Database Formats and Multi-Contig Support (source,R code) Genomes (source,R code) Manual (source,R code) |
| Package source: | misha_5.3.2.tar.gz |
| Windows binaries: | r-devel:not available, r-release:not available, r-oldrel:not available |
| macOS binaries: | r-release (arm64):misha_5.3.2.tgz, r-oldrel (arm64):misha_5.3.2.tgz, r-release (x86_64):misha_5.3.2.tgz, r-oldrel (x86_64):misha_5.3.2.tgz |
| Old sources: | misha archive |
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