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ddpcr: Analysis and Visualization of Droplet Digital PCR in R and onthe Web

An interface to explore, analyze, and visualize droplet digital PCR (ddPCR) data in R. This is the first non-proprietary software for analyzing two-channel ddPCR data. An interactive tool was also created and is available online to facilitate this analysis for anyone who is not comfortable with using R.

Version:1.15.2
Depends:R (≥ 3.1.0)
Imports:DT (≥ 0.2),dplyr (≥ 0.5.0),ggplot2 (≥ 2.2.0),lazyeval (≥ 0.1.10),magrittr (≥ 1.5),mixtools (≥ 1.0.2),plyr (≥1.8.1),readr (≥ 0.1.0),shiny (≥ 0.11.0),shinydisconnect,shinyjs (≥ 0.4.0),tibble
Suggests:ggExtra (≥ 0.3.0), graphics, grid (≥ 3.2.2),gridExtra (≥2.0.0),knitr (≥ 1.7),rmarkdown, stats,testthat (≥ 0.11.0), utils
Published:2025-11-08
DOI:10.32614/CRAN.package.ddpcr
Author:Dean AttaliORCID iD [aut, cre]
Maintainer:Dean Attali <daattali at gmail.com>
BugReports:https://github.com/daattali/ddpcr/issues
License:MIT + fileLICENSE
URL:https://github.com/daattali/ddpcr,https://daattali.com/shiny/ddpcr/
NeedsCompilation:no
Materials:README,NEWS
CRAN checks:ddpcr results

Documentation:

Reference manual:ddpcr.html ,ddpcr.pdf
Vignettes:Algorithms in ddpcr analysis (source,R code)
Extending ddpcr by adding new plate types (source,R code)
Package ddpcr (source,R code)
Implementation technical details (source,R code)

Downloads:

Package source: ddpcr_1.15.2.tar.gz
Windows binaries: r-devel:ddpcr_1.15.2.zip, r-release:ddpcr_1.15.2.zip, r-oldrel:ddpcr_1.15.2.zip
macOS binaries: r-release (arm64):ddpcr_1.15.2.tgz, r-oldrel (arm64):ddpcr_1.15.2.tgz, r-release (x86_64):ddpcr_1.15.2.tgz, r-oldrel (x86_64):ddpcr_1.15.2.tgz
Old sources: ddpcr archive

Reverse dependencies:

Reverse imports:EFAfactors
Reverse suggests:RRmorph,RRphylo

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=ddpcrto link to this page.


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