MKomics: Omics Data Analysis
Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007> ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).
| Version: | 0.7 |
| Depends: | R (≥ 3.5.0) |
| Imports: | stats, utils, graphics, grDevices,RColorBrewer,robustbase,limma, grid,circlize,ComplexHeatmap |
| Suggests: | knitr,rmarkdown |
| Published: | 2021-08-08 |
| DOI: | 10.32614/CRAN.package.MKomics |
| Author: | Matthias Kohl [aut, cre] |
| Maintainer: | Matthias Kohl <Matthias.Kohl at stamats.de> |
| License: | LGPL-3 |
| URL: | https://www.stamats.de/ |
| NeedsCompilation: | no |
| Citation: | MKomics citation info |
| Materials: | NEWS |
| CRAN checks: | MKomics results |
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