waves: Vis-NIR Spectral Analysis Wrapper
Originally designed application in the context of resource-limited plant research and breeding programs, 'waves' provides an open-source solution to spectral data processing and model development by bringing useful packages together into a streamlined pipeline. This package is wrapper for functions related to the analysis of point visible and near-infrared reflectance measurements. It includes visualization, filtering, aggregation, preprocessing, cross-validation set formation, model training, and prediction functions to enable open-source association of spectral and reference data. This package is documented in a peer-reviewed manuscript in the Plant Phenome Journal <doi:10.1002/ppj2.20012>. Specialized cross-validation schemes are described in detail in Jarquín et al. (2017) <doi:10.3835/plantgenome2016.12.0130>. Example data is from Ikeogu et al. (2017) <doi:10.1371/journal.pone.0188918>.
| Version: | 0.2.6 |
| Depends: | R (≥ 3.5) |
| Imports: | caret,dplyr,ggplot2,lifecycle,magrittr,pls,prospectr,randomForest,readr,rlang,scales,spectacles,stringr,tibble,tidyr (≥ 1.0),tidyselect |
| Suggests: | testthat (≥ 2.1.0),knitr,rmarkdown |
| Published: | 2025-10-30 |
| DOI: | 10.32614/CRAN.package.waves |
| Author: | Jenna Hershberger [aut, cre], Michael Gore [ths], NSF BREAD IOS-1543958 [fnd] |
| Maintainer: | Jenna Hershberger <jmh579 at cornell.edu> |
| BugReports: | https://github.com/GoreLab/waves/issues |
| License: | MIT + fileLICENSE |
| URL: | https://GoreLab.github.io/waves/,https://github.com/GoreLab/waves |
| NeedsCompilation: | no |
| Citation: | waves citation info |
| Materials: | README,NEWS |
| CRAN checks: | waves results |
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