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mppR 1.5.0
- Modification replacement of the functions QTL_effect_main_QxE byQTL_effect_main_QEI and QTL_effect_QxEC by QTL_effect_main_QxEC toupdate the procedure to estimate the significance of the QTL byenvironment interaction of the parental allelic effects and theestimation of the sensitivity slope
- Correction of a bug to calculate the significance of the QTLxEeffect using the Wald test
mppR 1.4.0
- Addition of function to perform multi-parent multi-environment QTLdetection (mppGE_SIM, mppGE_CIM, mppGE_proc, etc.)
- Addition of a new vignette to illustrate the multi-parentmulti-environment QTL detection
- Extra function (mppData_add_pheno, mppData_mdf_pheno) to manipulatemppData objects especially modify the phenotypic data
mppR 1.3.0
- Correction of few problems to load BCsFt populations(IBD.mppData).
- Addition of new options in MQE_proc: possibility to select areference parent effect calculation, possibility to calculate aconfidence interval for the QTL positions
- Addition of new functions (QTL_forward, mpp_forward) to realize aMPP QTL detection using a forward regression strategy
mppR 1.2.1
- Correction due to the fact that package synbreed was removed fromCRAN
- The possibility to do marker imputation was suppressed.
- Small modification in the genetic effect plot. Inversion ofcolor
mppR 1.2.0
- Corrections of bugs affecting the presentation of the QTL additiveeffects in: QTL_gen_effects(), MQE_gen_effects(), and the QTL reports ofmpp_proc() and MQE_proc()
- Review of the vignette, small modifications in the documentation andin the error messages
- Stop to update the branch ‘mppR_clusthaplo’. Stay two branches:‘master’ containing the largest version of the package with mixed modelsand direct call to clusthaplo, and ‘mppR_CRAN’ a reduced version withoutthe mixed models and the call to clusthaplo.
mppR 1.1.11
- Put dependency to the ‘synbreed’ package as suggested and notdepends
mppR 1.1.10
- version of the package contained on branch ‘mppR_CRAN’ published onCRAN
mppR 1.1.8
- submission to CRAN
- Revision: suppress the dependency to clusthaplo. Form two brancheson Github: ‘mppR_clusthaplo’ (contain function to call clusthaplo) and‘mppR_CRAN’
mppR 1.1.7
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