mikropml: User-Friendly R Package for Supervised Machine LearningPipelines
An interface to build machine learning models for classification and regression problems. 'mikropml' implements the ML pipeline described by Topçuoğlu et al. (2020) <doi:10.1128/mBio.00434-20> with reasonable default options for data preprocessing, hyperparameter tuning, cross-validation, testing, model evaluation, and interpretation steps. See the website <https://www.schlosslab.org/mikropml/> for more information, documentation, and examples.
| Version: | 1.7.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | caret,dplyr,e1071,glmnet,kernlab, methods,MLmetrics,randomForest,rlang,rpart,S4Vectors,SingleCellExperiment, stats,SummarizedExperiment,tidyselect,TreeSummarizedExperiment, utils,xgboost |
| Suggests: | assertthat,doFuture,forcats,foreach,furrr,future,future.apply,ggplot2,knitr,progress,progressr,purrr,rmarkdown,roxygen2,rsample,styler,testthat,tidyr,usethis |
| Published: | 2025-10-29 |
| DOI: | 10.32614/CRAN.package.mikropml |
| Author: | Begüm Topçuoğlu [aut], Zena Lapp [aut], Kelly Sovacool [aut, cre], Evan Snitkin [aut], Jenna Wiens [aut], Patrick Schloss [aut], Nick Lesniak [ctb], Courtney Armour [ctb], Sarah Lucas [ctb], Tuomas Borman [ctb] |
| Maintainer: | Kelly Sovacool <sovacool at umich.edu> |
| BugReports: | https://github.com/SchlossLab/mikropml/issues |
| License: | MIT + fileLICENSE |
| URL: | https://www.schlosslab.org/mikropml/,https://github.com/SchlossLab/mikropml |
| NeedsCompilation: | no |
| Citation: | mikropml citation info |
| Materials: | README,NEWS |
| CRAN checks: | mikropml results |
Documentation:
| Reference manual: | mikropml.html ,mikropml.pdf |
| Vignettes: | Introduction to mikropml (source,R code) mikropml paper (source,R code) |
Downloads:
| Package source: | mikropml_1.7.0.tar.gz |
| Windows binaries: | r-devel:mikropml_1.7.0.zip, r-release:mikropml_1.7.0.zip, r-oldrel:mikropml_1.7.0.zip |
| macOS binaries: | r-release (arm64):mikropml_1.6.2.tgz, r-oldrel (arm64):mikropml_1.7.0.tgz, r-release (x86_64):mikropml_1.6.2.tgz, r-oldrel (x86_64):mikropml_1.6.2.tgz |
| Old sources: | mikropml archive |
Linking:
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