Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.
| Version: | 2.12 |
| Depends: | R (≥ 3.5.0) |
| Suggests: | knitr,rmarkdown |
| Published: | 2024-02-27 |
| DOI: | 10.32614/CRAN.package.ontologyIndex |
| Author: | Daniel Greene |
| Maintainer: | Daniel Greene <dg333 at cam.ac.uk> |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Citation: | ontologyIndex citation info |
| Materials: | NEWS |
| CRAN checks: | ontologyIndex results |
| Reference manual: | ontologyIndex.html ,ontologyIndex.pdf |
| Vignettes: | Introduction to ontologyX (source,R code) Creating an ontology_index (source,R code) |
| Package source: | ontologyIndex_2.12.tar.gz |
| Windows binaries: | r-devel:ontologyIndex_2.12.zip, r-release:ontologyIndex_2.12.zip, r-oldrel:ontologyIndex_2.12.zip |
| macOS binaries: | r-release (arm64):ontologyIndex_2.12.tgz, r-oldrel (arm64):ontologyIndex_2.12.tgz, r-release (x86_64):ontologyIndex_2.12.tgz, r-oldrel (x86_64):ontologyIndex_2.12.tgz |
| Old sources: | ontologyIndex archive |
| Reverse depends: | CardinalIO,ontoFAST,ontoProc |
| Reverse imports: | BiocSet,fobitools,gsEasy,immunotation,ontologyPlot,ontologySimilarity,ontophylo,rmzqc,scOntoMatch,SimReg,xCell2 |
| Reverse suggests: | bugsigdbr,scDiffCom |
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