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leidenbase: R and C/C++ Wrappers to Run the Leiden find_partition() Function

An R to C/C++ interface that runs the Leiden community detection algorithm to find a basic partition (). It runs the equivalent of the 'leidenalg' find_partition() function, which is given in the 'leidenalg' distribution file 'leiden/src/functions.py'. This package includes the required source code files from the official 'leidenalg' distribution and functions from the R 'igraph' package. The 'leidenalg' distribution is available from <https://github.com/vtraag/leidenalg/> and the R 'igraph' package is available from <https://igraph.org/r/>. The Leiden algorithm is described in the article by Traag et al. (2019) <doi:10.1038/s41598-019-41695-z>. Leidenbase includes code from the packages: igraph version 0.9.8 with license GPL (>= 2), leidenalg version 0.8.10 with license GPL 3.

Version:0.1.36
Depends:R (≥ 3.5.0)
Imports:igraph (≥ 0.9.0)
Suggests:rmarkdown,knitr,testthat (≥ 3.1.0),pandoc
Published:2025-12-16
DOI:10.32614/CRAN.package.leidenbase
Author:Brent Ewing [aut, cre], Vincent Traag [ctb], Gábor Csárdi [ctb], Tamás Nepusz [ctb], Szabolcs Horvat [ctb], Fabio Zanini [ctb]
Maintainer:Brent Ewing <bge at uw.edu>
BugReports:https://github.com/cole-trapnell-lab/leidenbase/issues
License:GPL-3
URL:https://github.com/cole-trapnell-lab/leidenbase
NeedsCompilation:yes
Materials:NEWS
CRAN checks:leidenbase results

Documentation:

Reference manual:leidenbase.html ,leidenbase.pdf
Vignettes:leidenbase (source,R code)

Downloads:

Package source: leidenbase_0.1.36.tar.gz
Windows binaries: r-devel:leidenbase_0.1.35.zip, r-release:leidenbase_0.1.35.zip, r-oldrel:leidenbase_0.1.35.zip
macOS binaries: r-release (arm64):leidenbase_0.1.36.tgz, r-oldrel (arm64):leidenbase_0.1.36.tgz, r-release (x86_64):leidenbase_0.1.36.tgz, r-oldrel (x86_64):leidenbase_0.1.36.tgz
Old sources: leidenbase archive

Reverse dependencies:

Reverse imports:monocle
Reverse suggests:ClustAssess,Seurat

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=leidenbaseto link to this page.


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