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SeuratObject: Data Structures for Single Cell Data

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for more details.

Version:	5.3.0
Depends:	R (≥ 4.1.0),sp (≥ 1.5.0)
Imports:	future,future.apply,generics, grDevices, grid,lifecycle,Matrix (≥ 1.6.4), methods,progressr,Rcpp (≥ 1.0.5),rlang (≥ 0.4.7),spam, stats, tools, utils
LinkingTo:	Rcpp,RcppEigen
Suggests:	BPCells,DelayedArray,fs (≥ 1.5.2),sf (≥ 1.0.0),ggplot2,HDF5Array,rmarkdown,testthat
Published:	2025-12-12
DOI:	10.32614/CRAN.package.SeuratObject
Author:	Paul Hoffman [aut], Rahul Satija [aut, cre], David Collins [aut], Yuhan Hao [aut], Austin Hartman [aut], Gesmira Molla [aut], Andrew Butler [aut], Tim Stuart [aut], Madeline Kowalski [ctb], Saket Choudhary [ctb], Skylar Li [ctb], Longda Jiang [ctb], Anagha Shenoy [ctb], Jeff Farrell [ctb], Shiwei Zheng [ctb], Christoph Hafemeister [ctb], Patrick Roelli [ctb]
Maintainer:	Rahul Satija <seurat at nygenome.org>
BugReports:	https://github.com/satijalab/seurat-object/issues
License:	MIT + fileLICENSE
URL:	https://satijalab.github.io/seurat-object/,https://github.com/satijalab/seurat-object
NeedsCompilation:	yes
Additional_repositories:	https://bnprks.r-universe.dev
Materials:	NEWS
In views:	Omics
CRAN checks:	SeuratObject results

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