readyomics: Ready-to-Use Omics Formatting, Analysis, and VisualizationPipeline
Provides a flexible and streamlined pipeline for formatting, analyzing, and visualizing omics data, regardless of omics type (e.g. transcriptomics, proteomics, metabolomics). The package includes tools for shaping input data into analysis-ready structures, fitting linear or mixed-effect models, extracting key contrasts, and generating a rich variety of ready-to-use publication-quality plots. Designed for transparency and reproducibility across a wide range of study designs, with customizable components for statistical modeling.
| Version: | 0.2.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | dplyr,future,future.apply,ggplot2,lme4,lmerTest, methods,permute,rlang, stats,stringr,tidyr, utils,vegan,zCompositions |
| Suggests: | ape,data.table,ggrepel,ggridges,IHW,imputeLCMD,knitr,phyloseq,progressr,purrr,qvalue,rmarkdown,ropls,scales,testthat (≥ 3.0.0) |
| Published: | 2025-10-20 |
| DOI: | 10.32614/CRAN.package.readyomics |
| Author: | Laura Martinez-Gili [cre, aut, cph] |
| Maintainer: | Laura Martinez-Gili <martinez.gili.laura at gmail.com> |
| BugReports: | https://github.com/lmartinezgili/readyomics/issues |
| License: | MIT + fileLICENSE |
| URL: | https://lmartinezgili.github.io/readyomics/,https://github.com/lmartinezgili/readyomics |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | readyomics results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=readyomicsto link to this page.