BOLDconnectR: Retrieve, Transform and Analyze the Barcode of Life Data SystemsData
Facilitates retrieval, transformation and analysis of the data from the Barcode of Life Data Systems (BOLD) database <https://boldsystems.org/>. This package allows both public and private user data to be easily downloaded into the R environment using a variety of inputs such as: IDs (processid, sampleid), BINs, dataset codes, project codes, taxonomy, geography etc. It provides frictionless data conversion into formats compatible with other R-packages and third-party tools, as well as functions for sequence alignment & clustering, biodiversity analysis and spatial mapping.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.0.0) |
| Imports: | ape (≥ 5.5),BAT (≥ 2.0),data.table (≥ 1.13),dplyr (≥1.0.1),ggplot2 (≥ 3.3.2),httr (≥ 1.4.2),jsonlite (≥ 1.7),maps (≥ 3.3), methods,reshape2,rnaturalearth,sf (≥ 0.9.4),skimr (≥ 2.1.2),tidyr (≥ 1.1.1), utils,vegan (≥ 2.5.7) |
| Suggests: | Biostrings,BiocManager,msa,muscle |
| Published: | 2025-09-17 |
| DOI: | 10.32614/CRAN.package.BOLDconnectR |
| Author: | Sameer Padhye [aut, cre], Liliana Ballesteros-Mejia [aut], Sujeevan Ratnasingham [aut] |
| Maintainer: | Sameer Padhye <spadhye at uoguelph.ca> |
| License: | MIT + fileLICENSE |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | BOLDconnectR results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=BOLDconnectRto link to this page.