pegas: Population and Evolutionary Genetics Analysis System
Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
| Version: | 1.4 |
| Depends: | R (≥ 3.2.0),ape (≥ 5.3-11) |
| Imports: | graphics, utils, methods |
| Suggests: | rgl,snpStats,adegenet |
| Published: | 2025-12-08 |
| DOI: | 10.32614/CRAN.package.pegas |
| Author: | Emmanuel Paradis [aut, cre, cph], Thibaut Jombart [aut, cph], Zhian N. Kamvar [aut, cph], Brian Knaus [aut, cph], Klaus Schliep [aut, cph], Alastair Potts [aut, cph], David Winter [aut, cph] |
| Maintainer: | Emmanuel Paradis <Emmanuel.Paradis at ird.fr> |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://emmanuelparadis.github.io/pegas.html |
| NeedsCompilation: | yes |
| Citation: | pegas citation info |
| Materials: | NEWS |
| CRAN checks: | pegas results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: | StAMPP |
| Reverse imports: | graph4lg,HACSim,mmod,PopGenReport,poppr,RAINBOWR,spider,wingen |
| Reverse suggests: | adegenet,dartR,dartR.base,hierfstat |
Linking:
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