detrendr: Detrend Images
Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.
| Version: | 0.6.15 |
| Depends: | R (≥ 3.1) |
| Imports: | arrayhelpers (≥ 1.1.0),autothresholdr (≥ 1.3.11),checkmate (≥ 1.9.3),doParallel,dplyr,filesstrings (≥ 3.2.4),foreach,ijtiff (≥ 2.2),iterators,magrittr (≥ 1.5), parallel,plyr,purrr,Rcpp (≥ 1.0.10),RcppParallel (≥5.1.7),rlang (≥ 0.3.3),stringr (≥ 1.4), tools,withr (≥2.1) |
| LinkingTo: | Rcpp (≥ 1.0.10),RcppParallel (≥ 5.1.7) |
| Suggests: | abind,covr,ggplot2,glue (≥ 1.3.0), graphics,gridExtra,knitr,lattice,MASS,matrixStats,mgcv,pacman,R.utils,rmarkdown,spelling,testthat (≥ 3.0),tidyr |
| Published: | 2023-03-04 |
| DOI: | 10.32614/CRAN.package.detrendr |
| Author: | Rory Nolan [aut, cre], Luis Alvarez [ctb, cph], Sergi Padilla-Parra [ctb, ths, cph] |
| Maintainer: | Rory Nolan <rorynoolan at gmail.com> |
| BugReports: | https://github.com/rorynolan/detrendr/issues |
| License: | BSD_3_clause + fileLICENSE |
| URL: | https://rorynolan.github.io/detrendr/,https://github.com/rorynolan/detrendr#readme |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Language: | en-US |
| Citation: | detrendr citation info |
| Materials: | README,NEWS |
| CRAN checks: | detrendr results |
Documentation:
| Reference manual: | detrendr.html ,detrendr.pdf |
| Vignettes: | Batch mode (source,R code) Linescan data (source,R code) Detrending single images (source,R code) |
Downloads:
| Package source: | detrendr_0.6.15.tar.gz |
| Windows binaries: | r-devel:detrendr_0.6.15.zip, r-release:detrendr_0.6.15.zip, r-oldrel:detrendr_0.6.15.zip |
| macOS binaries: | r-release (arm64):detrendr_0.6.15.tgz, r-oldrel (arm64):detrendr_0.6.15.tgz, r-release (x86_64):detrendr_0.6.15.tgz, r-oldrel (x86_64):detrendr_0.6.15.tgz |
| Old sources: | detrendr archive |
Reverse dependencies:
| Reverse imports: | nandb |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=detrendrto link to this page.