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tcgaViz: Visualization Tool for the Cancer Genome Atlas Program (TCGA)

Differential analysis of tumor tissue immune cell type abundance based on RNA-seq gene-level expression from The Cancer Genome Atlas (TCGA; <https://pancanatlas.xenahubs.net>) database.

Version:1.0.2
Depends:R (≥ 2.10)
Imports:config,data.table,dplyr,DT,ggplot2,ggpubr,golem, grDevices,magrittr, methods,plotly,readr,reshape2,rlang,rstatix,scales,shiny,shinyFeedback,shinyjs, stats,stringr,tidyr,tidyselect, utils
Suggests:covr,knitr,rmarkdown,spelling,testthat
Published:2023-04-04
DOI:10.32614/CRAN.package.tcgaViz
Author:Etienne Camenen [aut, cre], Gilles Marodon [aut], Nicolas Aubert [aut]
Maintainer:Etienne Camenen <etienne.camenen at gmail.com>
License:GPL-3
NeedsCompilation:no
Language:en-US
Materials:README
CRAN checks:tcgaViz results

Documentation:

Reference manual:tcgaViz.html ,tcgaViz.pdf
Vignettes:Tutorial (source,R code)

Downloads:

Package source: tcgaViz_1.0.2.tar.gz
Windows binaries: r-devel:tcgaViz_1.0.2.zip, r-release:tcgaViz_1.0.2.zip, r-oldrel:tcgaViz_1.0.2.zip
macOS binaries: r-release (arm64):tcgaViz_1.0.2.tgz, r-oldrel (arm64):tcgaViz_1.0.2.tgz, r-release (x86_64):tcgaViz_1.0.2.tgz, r-oldrel (x86_64):tcgaViz_1.0.2.tgz
Old sources: tcgaViz archive

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=tcgaVizto link to this page.


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