statgenGWAS: Genome Wide Association Studies
Fast single trait Genome Wide Association Studies (GWAS) following the method described in Kang et al. (2010), <doi:10.1038/ng.548>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.
| Version: | 1.0.12 |
| Depends: | R (≥ 3.6) |
| Imports: | data.table,ggplot2 (≥ 3.0.0),LMMsolver, methods,rlang,Rcpp,sommer (≥ 4.4.1) |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | knitr,rmarkdown,officer,tinytest,snpStats,vcfR |
| Published: | 2025-07-01 |
| DOI: | 10.32614/CRAN.package.statgenGWAS |
| Author: | Bart-Jan van Rossum [aut, cre], Willem Kruijer [aut], Fred van Eeuwijk [ctb], Martin Boer [ctb], Marcos Malosetti [ctb], Daniela Bustos-Korts [ctb], Emilie Millet [ctb], Joao Paulo [ctb], Maikel Verouden [ctb], Ron Wehrens [ctb], Choazhi Zheng [ctb] |
| Maintainer: | Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl> |
| BugReports: | https://github.com/Biometris/statgenGWAS/issues |
| License: | GPL-3 |
| URL: | https://biometris.github.io/statgenGWAS/index.html,https://github.com/Biometris/statgenGWAS/ |
| NeedsCompilation: | yes |
| Materials: | README,NEWS |
| In views: | Agriculture |
| CRAN checks: | statgenGWAS results |
Documentation:
| Reference manual: | statgenGWAS.html ,statgenGWAS.pdf |
| Vignettes: | Introduction to the statgenGWAS package (source,R code) |
Downloads:
| Package source: | statgenGWAS_1.0.12.tar.gz |
| Windows binaries: | r-devel:statgenGWAS_1.0.12.zip, r-release:statgenGWAS_1.0.12.zip, r-oldrel:statgenGWAS_1.0.12.zip |
| macOS binaries: | r-release (arm64):statgenGWAS_1.0.12.tgz, r-oldrel (arm64):statgenGWAS_1.0.12.tgz, r-release (x86_64):statgenGWAS_1.0.12.tgz, r-oldrel (x86_64):statgenGWAS_1.0.12.tgz |
| Old sources: | statgenGWAS archive |
Reverse dependencies:
| Reverse depends: | statgenMPP |
| Reverse imports: | statgenIBD,statgenQTLxT |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=statgenGWASto link to this page.