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sequoia: Pedigree Inference from SNPs

Multi-generational pedigree inference from incomplete data on hundreds of SNPs, including parentage assignment and sibship clustering. See Huisman (2017) (<doi:10.1111/1755-0998.12665>) for more information.

Version:3.1.3
Depends:R (≥ 3.5.0)
Imports:plyr (≥ 1.8.0), stats, utils, graphics,cli
Suggests:openxlsx,knitr,rmarkdown,bookdown,kinship2,R.rsp,hexbin,data.table,vcfR,adegenet
Published:2025-11-18
DOI:10.32614/CRAN.package.sequoia
Author:Jisca Huisman [aut, cre]
Maintainer:Jisca Huisman <jisca.huisman at gmail.com>
License:GPL-2
URL:https://jiscah.github.io/
NeedsCompilation:yes
SystemRequirements:Fortran95
Citation:sequoia citation info
Materials:NEWS
CRAN checks:sequoia results

Documentation:

Reference manual:sequoia.html ,sequoia.pdf
Vignettes:PedCompare Example (Griffin Pedigree) (source,R code)
Quick start example 1: Simulated data (source,R code)
Sequoia - Age 'Prior' (source,R code)
Sequoia User Guide (source,R code)
Sequoia flowchart (source)
Mitochondrial haplotypes (source)

Downloads:

Package source: sequoia_3.1.3.tar.gz
Windows binaries: r-devel:sequoia_3.1.3.zip, r-release:sequoia_3.1.3.zip, r-oldrel:sequoia_3.1.3.zip
macOS binaries: r-release (arm64):sequoia_3.1.3.tgz, r-oldrel (arm64):sequoia_3.1.3.tgz, r-release (x86_64):sequoia_3.1.3.tgz, r-oldrel (x86_64):sequoia_3.1.3.tgz
Old sources: sequoia archive

Linking:

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