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Rtsne: T-Distributed Stochastic Neighbor Embedding using a Barnes-HutImplementation

An R wrapper around the fast T-distributed Stochastic Neighbor Embedding implementation by Van der Maaten (see <https://github.com/lvdmaaten/bhtsne/> for more information on the original implementation).

Version:0.17
Imports:Rcpp (≥ 0.11.0), stats
LinkingTo:Rcpp
Suggests:irlba,testthat
Published:2023-12-07
DOI:10.32614/CRAN.package.Rtsne
Author:Jesse Krijthe [aut, cre], Laurens van der Maaten [cph] (Author of original C++ code)
Maintainer:Jesse Krijthe <jkrijthe at gmail.com>
License:fileLICENSE
URL:https://github.com/jkrijthe/Rtsne
NeedsCompilation:yes
Citation:Rtsne citation info
Materials:README,NEWS
CRAN checks:Rtsne results

Documentation:

Reference manual:Rtsne.html ,Rtsne.pdf

Downloads:

Package source: Rtsne_0.17.tar.gz
Windows binaries: r-devel:Rtsne_0.17.zip, r-release:Rtsne_0.17.zip, r-oldrel:Rtsne_0.17.zip
macOS binaries: r-release (arm64):Rtsne_0.17.tgz, r-oldrel (arm64):Rtsne_0.17.tgz, r-release (x86_64):Rtsne_0.17.tgz, r-oldrel (x86_64):Rtsne_0.17.tgz
Old sources: Rtsne archive

Reverse dependencies:

Reverse depends:BiRewire
Reverse imports:AutoPipe,bbknnR,BulkSignalR,caretSDM,CATALYST,ccfindR,celda,CelliD,CellTrails,ChromSCape,chromVAR,CINNA,CiteFuse,clusterWebApp,ComBatFamQC,conos,Coralysis,densityClust,densvis,EmbedSOM,esetVis,EvoPhylo,FateID,FlowSOM,ggpca,ggsem,HDclust,HIPPO,homosapienDEE2CellScore,HVT,iCellR,ILoReg,immunaut,labdsv,Linnorm,M3C,maotai,MatrixQCvis,MBMethPred,Mercator,microbiome,MOFA2,monocle,PAC,pagoda2,pandemonium,pipeComp,polarisR,PsychWordVec,RaceID,randomcoloR,RCSL,regioneReloaded,scater,scMultiSim,Sconify,scRNAtools,scStability,scTHI,scTreeViz,Seurat,sincell,singleCellTK,SNPfiltR,stPipe,SubCellBarCode,SuperCell,swaRmverse,systemPipeTools,theftdlc,tomoda,visvow,WormTensor,ZetaSuite
Reverse suggests:ASURAT,AUCell,BloodCancerMultiOmics2017,CellMixS,clusterExperiment,cola,coRanking,COTAN,diceR,dimRed,dyndimred,Evacluster,fdm2id,HCAData,HDCytoData,iasva,immunarch,inferCSN,iSEEu,looking4clusters,MiscMetabar,mmb,netSmooth,NewWave,NGCHM,notameViz,pctax,Platypus,proActiv,ProjectionBasedClustering,pRoloc,qmtools,rliger,rSWeeP,SanityR,scBFA,scds,scGPS,seriation,sgdGMF,SingleCellExperiment,SPIAT,stm,systemPipeShiny,tidybulk,tinyarray,topolow,UCSCXenaShiny,velociraptor,zinbwave

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=Rtsneto link to this page.


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