EvoPhylo: Pre- And Postprocessing of Morphological Data from Relaxed ClockBayesian Phylogenetics
Performs automated morphological character partitioning for phylogenetic analyses and analyze macroevolutionary parameter outputs from clock (time-calibrated) Bayesian inference analyses, following concepts introduced by Simões and Pierce (2021) <doi:10.1038/s41559-021-01532-x>.
| Version: | 0.3.5 |
| Depends: | R (≥ 4.0.0) |
| Imports: | ape (≥ 1.16.2),dplyr (≥ 1.0.8),cluster (≥ 2.1.2),deeptime (≥ 0.2.0),ggplot2 (≥ 3.3.5),ggrepel (≥ 0.9.1),ggtree (≥ 3.1.5.902),patchwork,treeio (≥ 1.16.2),Rtsne (≥0.15),unglue (≥ 0.1.0),tidyr,tibble, tools,phangorn,magrittr |
| Suggests: | devtools,kableExtra,knitr,rmarkdown |
| Published: | 2025-08-27 |
| DOI: | 10.32614/CRAN.package.EvoPhylo |
| Author: | Tiago Simoes [cre, aut], Noah Greifer [aut], Joelle Barido-Sottani [aut], Stephanie Pierce [aut] |
| Maintainer: | Tiago Simoes <trsimoes87 at gmail.com> |
| BugReports: | https://github.com/tiago-simoes/EvoPhylo/issues |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/tiago-simoes/EvoPhylo,https://tiago-simoes.github.io/EvoPhylo/ |
| NeedsCompilation: | no |
| Citation: | EvoPhylo citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | EvoPhylo results |
Documentation:
Downloads:
| Package source: | EvoPhylo_0.3.5.tar.gz |
| Windows binaries: | r-devel:EvoPhylo_0.3.5.zip, r-release:EvoPhylo_0.3.5.zip, r-oldrel:EvoPhylo_0.3.5.zip |
| macOS binaries: | r-release (arm64):EvoPhylo_0.3.5.tgz, r-oldrel (arm64):EvoPhylo_0.3.5.tgz, r-release (x86_64):EvoPhylo_0.3.5.tgz, r-oldrel (x86_64):EvoPhylo_0.3.5.tgz |
| Old sources: | EvoPhylo archive |
Linking:
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