SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.
| Version: | 2.1.2 |
| Depends: | R (≥ 2.10),hommel (≥ 1.4),ggplot2 |
| Suggests: | knitr,rmarkdown |
| Published: | 2024-06-11 |
| DOI: | 10.32614/CRAN.package.rSEA |
| Author: | Mitra Ebrahimpoor |
| Maintainer: | Mitra Ebrahimpoor <mitra.ebrahimpoor at gmail.com> |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Materials: | README |
| In views: | Omics |
| CRAN checks: | rSEA results |
| Reference manual: | rSEA.html ,rSEA.pdf |
| Vignettes: | rSEA R package (source,R code) |
| Package source: | rSEA_2.1.2.tar.gz |
| Windows binaries: | r-devel:rSEA_2.1.2.zip, r-release:rSEA_2.1.2.zip, r-oldrel:rSEA_2.1.2.zip |
| macOS binaries: | r-release (arm64):rSEA_2.1.2.tgz, r-oldrel (arm64):rSEA_2.1.2.tgz, r-release (x86_64):rSEA_2.1.2.tgz, r-oldrel (x86_64):rSEA_2.1.2.tgz |
| Old sources: | rSEA archive |
| Reverse suggests: | ReporterScore |
Please use the canonical formhttps://CRAN.R-project.org/package=rSEAto link to this page.