A Bayesian method for Phenome-wide association studies (PheWAS) that identifies causal associations between genetic variants and traits, while simultaneously addressing confounding due to linkage disequilibrium. For details see Manipur et al (2024, Nature Communications) <doi:10.1038/s41467-024-49990-8>.
| Version: | 1.4.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 1.0.7),coloc,data.table,ggplot2,ggrepel,pheatmap, methods,viridis, stats, grDevices,magrittr, utils,matrixStats,dplyr |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | knitr,testthat (≥ 3.0.0),rmarkdown,RColorBrewer,ggpubr |
| Published: | 2025-07-30 |
| DOI: | 10.32614/CRAN.package.cophescan |
| Author: | Ichcha Manipur [aut, cre], Chris Wallace [aut] |
| Maintainer: | Ichcha Manipur <im504 at cam.ac.uk> |
| BugReports: | https://github.com/ichcha-m/cophescan/issues |
| License: | GPL-3 |
| URL: | https://github.com/ichcha-m/cophescan,https://ichcha-m.github.io/cophescan/ |
| NeedsCompilation: | yes |
| Citation: | cophescan citation info |
| Materials: | README,NEWS |
| CRAN checks: | cophescan results |
| Package source: | cophescan_1.4.2.tar.gz |
| Windows binaries: | r-devel:cophescan_1.4.2.zip, r-release:cophescan_1.4.2.zip, r-oldrel:cophescan_1.4.2.zip |
| macOS binaries: | r-release (arm64):cophescan_1.4.2.tgz, r-oldrel (arm64):cophescan_1.4.2.tgz, r-release (x86_64):cophescan_1.4.2.tgz, r-oldrel (x86_64):cophescan_1.4.2.tgz |
| Old sources: | cophescan archive |
Please use the canonical formhttps://CRAN.R-project.org/package=cophescanto link to this page.