mppR is an R package to perform QTL analysis of experimentalmulti-parent populations. The population must be composed of crossesbetween a set of at least three parents (e.g. factorial design,‘diallel’, or nested association mapping). The functions cover dataprocessing, QTL detection, and results visualization.
mppR has two different branches: “master” and “mppR_CRAN”. The“master” branch allows to perform MPP mixed model QTL detection callingthe asreml-R package and function parent_cluster.mppData that call thearchived R package clusthaplo for parent clustering. The branch“mppR_CRAN” do not contain the mixed models and the call toclusthaplo.
devtools::install_github("vincentgarin/mppR", ref = "master")See the two vignettes attached to the package.