phylogram: Dendrograms for Evolutionary Analysis
Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.
| Version: | 2.1.0 |
| Imports: | ape (≥ 4.0), methods, stats |
| Suggests: | dendextend,knitr,rmarkdown,testthat |
| Published: | 2018-06-25 |
| DOI: | 10.32614/CRAN.package.phylogram |
| Author: | Shaun Wilkinson [aut, cre], Simon Davy [aut] |
| Maintainer: | Shaun Wilkinson <shaunpwilkinson at gmail.com> |
| BugReports: | http://github.com/ropensci/phylogram/issues |
| License: | GPL-3 |
| URL: | http://github.com/ropensci/phylogram |
| NeedsCompilation: | no |
| Citation: | phylogram citation info |
| Materials: | README |
| In views: | Phylogenetics |
| CRAN checks: | phylogram results |
Documentation:
| Reference manual: | phylogram.html ,phylogram.pdf |
| Vignettes: | Introduction to the phylogram package (source,R code) |
Downloads:
| Package source: | phylogram_2.1.0.tar.gz |
| Windows binaries: | r-devel:phylogram_2.1.0.zip, r-release:phylogram_2.1.0.zip, r-oldrel:phylogram_2.1.0.zip |
| macOS binaries: | r-release (arm64):phylogram_2.1.0.tgz, r-oldrel (arm64):phylogram_2.1.0.tgz, r-release (x86_64):phylogram_2.1.0.tgz, r-oldrel (x86_64):phylogram_2.1.0.tgz |
| Old sources: | phylogram archive |
Reverse dependencies:
| Reverse imports: | dclust,didec,insect,kmer |
| Reverse suggests: | MoBPS,muscat |
Linking:
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