MAAPER: Analysis of Alternative Polyadenylation Using 3' End-LinkedReads
A computational method developed for model-based analysis of alternative polyadenylation (APA) using 3' end-linked reads. It accurately assigns 3' RNA-seq reads to polyA sites through statistical modeling, and generates multiple statistics for APA analysis. Please also see Li WV, Zheng D, Wang R, Tian B (2021) <doi:10.1186/s13059-021-02429-5>.
| Version: | 1.1.1 |
| Imports: | parallel,GenomicRanges,GenomicAlignments,GenomicFeatures,GenomeInfoDb, stats, utils,Rsamtools,IRanges,MASS |
| Suggests: | knitr,rmarkdown |
| Published: | 2021-08-14 |
| DOI: | 10.32614/CRAN.package.MAAPER |
| Author: | Wei Vivian Li [aut, cre] |
| Maintainer: | Wei Vivian Li <vivian.li at rutgers.edu> |
| License: | GPL-3 |
| URL: | https://github.com/Vivianstats/MAAPER,https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02429-5 |
| NeedsCompilation: | no |
| In views: | Omics |
| CRAN checks: | MAAPER results |
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