CovidMutations: Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease2019)
A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) <doi:10.20944/preprints202004.0529.v1>.
| Version: | 0.1.3 |
| Depends: | R (≥ 3.6) |
| Imports: | ggplot2,cowplot,seqinr,stringr, grDevices, graphics, utils,ggpubr,dplyr,VennDiagram |
| Suggests: | testthat |
| Published: | 2020-09-18 |
| DOI: | 10.32614/CRAN.package.CovidMutations |
| Author: | Shaoqian Ma [aut, cre], Yongyou Zhang [aut] |
| Maintainer: | Shaoqian Ma <shaoqianma at qq.com> |
| BugReports: | https://github.com/MSQ-123/CovidMutations/issues |
| License: | Artistic-2.0 |
| URL: | https://github.com/MSQ-123/CovidMutations |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| In views: | Epidemiology |
| CRAN checks: | CovidMutations results |
Documentation:
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