Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
| Version: | 2.1.11 |
| Depends: | ape,deSolve,GenSA,subplex,nloptr |
| Imports: | parallel,phytools,data.table,igraph, methods,diversitree,paleotree,plotrix,geiger,phangorn,TreeSim,corHMM |
| Suggests: | testthat,knitr,rmarkdown,markdown |
| Published: | 2023-02-11 |
| DOI: | 10.32614/CRAN.package.hisse |
| Author: | Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Daniel Caetano [aut], James Boyko [aut], Thais Vasconcelos [aut] |
| Maintainer: | Jeremy Beaulieu <jmbeauli at uark.edu> |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Citation: | hisse citation info |
| In views: | Phylogenetics |
| CRAN checks: | hisse results |