Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.
| Version: | 3.0.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ape,Rcpp,RcppProgress |
| LinkingTo: | Rcpp,RcppProgress |
| Suggests: | knitr,rmarkdown |
| Published: | 2025-05-09 |
| DOI: | 10.32614/CRAN.package.Apoderoides |
| Author: | Satoshi Aoki [aut, cph, cre], Keita Fukasawa [ctb] |
| Maintainer: | Satoshi Aoki <aokis1ll1 at gmail.com> |
| BugReports: | https://github.com/Sa-to-shi-A-o-ki/Apoderoides/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/Sa-to-shi-A-o-ki/Apoderoides |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | Apoderoides results |
| Reference manual: | Apoderoides.html ,Apoderoides.pdf |
| Vignettes: | Apoderoides Tutorial (source,R code) |
| Package source: | Apoderoides_3.0.1.tar.gz |
| Windows binaries: | r-devel:Apoderoides_3.0.1.zip, r-release:Apoderoides_3.0.1.zip, r-oldrel:Apoderoides_3.0.1.zip |
| macOS binaries: | r-release (arm64):Apoderoides_3.0.1.tgz, r-oldrel (arm64):Apoderoides_3.0.1.tgz, r-release (x86_64):Apoderoides_3.0.1.tgz, r-oldrel (x86_64):Apoderoides_3.0.1.tgz |
| Old sources: | Apoderoides archive |
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