Plot malaria parasite genetic data on two or more episodes. Compute per-person posterior probabilities that each Plasmodium vivax (Pv) recurrence is a recrudescence, relapse, or reinfection (3Rs) using per-person P. vivax genetic data on two or more episodes and a statistical model described in Taylor, Foo and White (2022) <doi:10.1101/2022.11.23.22282669>. Plot per-recurrence posterior probabilities.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.5) |
| Imports: | dplyr,fields, grDevices,igraph,matrixStats, methods,multicool,partitions,purrr,RColorBrewer |
| Suggests: | codetools,gtools,knitr,Matrix,plyr,R.rsp,rmarkdown,testthat (≥ 3.0.0),tictoc, utils |
| Published: | 2025-11-20 |
| DOI: | 10.32614/CRAN.package.Pv3Rs |
| Author: | Aimee Taylor [aut, cre], Yong See Foo [aut], Tymoteusz Kwiecinski [com] (compiled included macros.Rd), Duncan Murdoch [ctb] (author of included macros.Rd), Mans Magnusson [ctb] (author of included msg_progress_bar.R), Institut Pasteur [cph], European Union, Project 101110393 [fnd] |
| Maintainer: | Aimee Taylor <aimee.taylor at pasteur.fr> |
| BugReports: | https://github.com/aimeertaylor/Pv3Rs/issues |
| License: | GPL (≥ 3) |
| URL: | https://aimeertaylor.github.io/Pv3Rs/,https://github.com/aimeertaylor/Pv3Rs |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | Pv3Rs results |