autothresholdr: An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See <https://imagej.net/plugins/auto-threshold> and Landini et al. (2017) <doi:10.1111/jmi.12474>.
| Version: | 1.4.3 |
| Depends: | R (≥ 3.5) |
| Imports: | checkmate (≥ 1.9.3),ijtiff (≥ 2.2),magrittr (≥ 1.5),purrr,Rcpp (≥ 1.0.11),rlang (≥ 0.3.3), stats,strex (≥1.4.1),stringr (≥ 1.4) |
| LinkingTo: | Rcpp (≥ 1.0.11) |
| Suggests: | covr,dplyr,ggplot2,knitr,rmarkdown,spelling,testthat (≥ 3.0), utils |
| Published: | 2025-09-26 |
| DOI: | 10.32614/CRAN.package.autothresholdr |
| Author: | Rory Nolan [aut, cre, trl], Luis Alvarez [ctb], Sergi Padilla-Parra [ctb, ths], Gabriel Landini [ctb, cph] |
| Maintainer: | Rory Nolan <rorynoolan at gmail.com> |
| BugReports: | https://github.com/rorynolan/autothresholdr/issues |
| License: | GPL-3 |
| URL: | https://rorynolan.github.io/autothresholdr/,https://github.com/rorynolan/autothresholdr#readme |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | autothresholdr citation info |
| Materials: | NEWS |
| CRAN checks: | autothresholdr results |
Documentation:
| Reference manual: | autothresholdr.html ,autothresholdr.pdf |
| Vignettes: | Finding Thresholds (source,R code) Thresholding Image Stacks (source,R code) Thresholding Images (source,R code) |
Downloads:
| Package source: | autothresholdr_1.4.3.tar.gz |
| Windows binaries: | r-devel:autothresholdr_1.4.3.zip, r-release:autothresholdr_1.4.3.zip, r-oldrel:autothresholdr_1.4.3.zip |
| macOS binaries: | r-release (arm64):autothresholdr_1.4.3.tgz, r-oldrel (arm64):autothresholdr_1.4.3.tgz, r-release (x86_64):autothresholdr_1.4.3.tgz, r-oldrel (x86_64):autothresholdr_1.4.3.tgz |
| Old sources: | autothresholdr archive |
Reverse dependencies:
| Reverse imports: | coveR2,detrendr,hemispheR,islify,nandb |
| Reverse suggests: | rcaiman |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=autothresholdrto link to this page.