Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) <doi:10.12688/f1000research.9005.3>). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.
| Version: | 1.0.6 |
| Depends: | R (≥ 3.5.0) |
| Imports: | assertthat,DGEobj (≥ 1.0.3),dplyr, methods, stats,stringr |
| Suggests: | biomaRt,canvasXpress,conflicted,edgeR,glue,ggplot2,IHW,limma,knitr,qvalue,RNASeqPower,rmarkdown,statmod,sva,testthat,zFPKM |
| Published: | 2022-05-19 |
| DOI: | 10.32614/CRAN.package.DGEobj.utils |
| Author: | John Thompson [aut], Connie Brett [aut, cre], Isaac Neuhaus [aut], Ryan Thompson [aut] |
| Maintainer: | Connie Brett <connie at aggregate-genius.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README,NEWS |
| In views: | Omics |
| CRAN checks: | DGEobj.utils results |