CACIMAR: Cross-Species Analysis of Cell Identities, Markers andRegulations
A toolkit to perform cross-species analysis based on scRNA-seq data. This package contains 5 main features. (1) identify Markers in each cluster. (2) Cell type annotation (3) identify conserved markers. (4) identify conserved cell types. (5) identify conserved modules of regulatory networks.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.0),Seurat |
| Imports: | pheatmap,pbapply,psych,ROCR,reshape2,dplyr, grDevices, stats, methods,viridisLite |
| Suggests: | knitr,testthat (≥ 3.0.0) |
| Published: | 2022-05-18 |
| DOI: | 10.32614/CRAN.package.CACIMAR |
| Author: | Junyao Jiang |
| Maintainer: | Junyao Jiang <jiangjunyao789 at 163.com> |
| BugReports: | https://github.com/jiang-junyao/CACIMAR/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/jiang-junyao/CACIMAR |
| NeedsCompilation: | no |
| CRAN checks: | CACIMAR results[issues need fixing before 2026-01-12] |
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